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qtwas weights: adapt to fdr/qvalue variable selection#454

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gaow merged 3 commits intoStatFunGen:mainfrom
al4225:main
Mar 30, 2026
Merged

qtwas weights: adapt to fdr/qvalue variable selection#454
gaow merged 3 commits intoStatFunGen:mainfrom
al4225:main

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@al4225 al4225 commented Mar 30, 2026

  • Add screen_method parameter to allow choosing between qvalue/fdr screening
  • Make pre_filter_by_pqr optional (default FALSE) to skip p-value pre-filtering
  • Expose initial_corr_filter_cutoff and full_rank_corr_filter_cutoff as parameters
  • Set screen_significant default to TRUE
  • Clean up indentation and simplify control flow

Anjing Liu and others added 3 commits March 30, 2026 12:21
…lter optional

- Add screen_method parameter to allow choosing between qvalue/fdr screening
- Make pre_filter_by_pqr optional (default FALSE) to skip p-value pre-filtering
- Expose initial_corr_filter_cutoff and full_rank_corr_filter_cutoff as parameters
- Set screen_significant default to TRUE
- Clean up indentation and simplify control flow

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
@gaow gaow merged commit 34d12e8 into StatFunGen:main Mar 30, 2026
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2 participants