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1. tle3-multiomics-NI2024 tle3-multiomics-NI2024 Public

   Multiomics analysis code for Tle3 study — RNA-seq, ATAC-seq, CUT&RUN (Nature Immunology, 2024)

   R

2. nextflow-bio-tutorials nextflow-bio-tutorials Public

   Step-by-step Nextflow DSL2 tutorials for bioinformatics: channels, QC, RNA-seq, variant calling, proteomics, scatter-gather, and container integration

   Nextflow

3. pubmed-local-rag pubmed-local-rag Public

   Python

4. proteomics-dea-bmd-pipeline proteomics-dea-bmd-pipeline Public

   R

5. lung-tme-deconv-profiler lung-tme-deconv-profiler Public

   R

6. rnaseq_local_chat rnaseq_local_chat Public

   Python