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Allow multiallelic sites#214

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olivierlabayle merged 11 commits intomainfrom
gwas_features
Mar 3, 2026
Merged

Allow multiallelic sites#214
olivierlabayle merged 11 commits intomainfrom
gwas_features

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@joshua-slaughter
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This is fairly straightforward. When using imputed SNPs as input it is more likely that you come across multiallelic sites, I have changed one line in the genotype DataFrame construction to allow for duplicate columns (appends "_i" to the end where i is the number of duplicates).

@joshua-slaughter
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@olivierlabayle after merging this with main and publishing the image, the feature branch for targene-pipeline will pass using tl-core:0.13.

@olivierlabayle olivierlabayle merged commit 9b72efe into main Mar 3, 2026
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