GitHub - TDA-Medical/Data-preprocessing: This is a pipeline covering preprocessing, exploratory analysis, and training of a Topological Autoencoder (TAE) using TCGA-BRCA gene expression data.

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 12 Commits
TAE		TAE
data_analysis		data_analysis
data_preprocessing		data_preprocessing
documents_paper		documents_paper
.gitattributes		.gitattributes
.gitignore		.gitignore
Description.txt		Description.txt
GSE62944_06_01_15_TCGA_24_548_Clinical_Variables_9264_Samples.txt		GSE62944_06_01_15_TCGA_24_548_Clinical_Variables_9264_Samples.txt
GSE62944_06_01_15_TCGA_24_548_Clinical_Variables_9264_Samples.txt.gz		GSE62944_06_01_15_TCGA_24_548_Clinical_Variables_9264_Samples.txt.gz
HowItsDone.txt		HowItsDone.txt
MATH_PRINCIPLES.pdf		MATH_PRINCIPLES.pdf
RESULT.md		RESULT.md
RESULT.pdf		RESULT.pdf
SINKHORN_GUIDE.md		SINKHORN_GUIDE.md
requirements.txt		requirements.txt
run_pipeline.sh		run_pipeline.sh
tae_dim16.pth		tae_dim16.pth
tae_dim32.pth		tae_dim32.pth
tae_dim64.pth		tae_dim64.pth

About

This is a pipeline covering preprocessing, exploratory analysis, and training of a Topological Autoencoder (TAE) using TCGA-BRCA gene expression data.