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554e4e0
feat(timsseek): add DigestSlice::as_str() for zero-alloc access
jspaezp Apr 16, 2026
e5df3d7
feat(timsseek): add SerSpeclibElement constructors + SpeclibWriter fo…
jspaezp Apr 16, 2026
884bb02
feat: scaffold speclib_build_cli crate
jspaezp Apr 16, 2026
4a756b3
feat(speclib_build): CLI, config, mods, dedup, decoys
jspaezp Apr 16, 2026
a85e849
feat(speclib_build): Koina HTTP client + model registry + request/res…
jspaezp Apr 16, 2026
84d76fd
feat(speclib_build): entry builder — Koina predictions to SerSpeclibE…
jspaezp Apr 16, 2026
bd2e7aa
feat(speclib_build): pipeline orchestration — digest→dedup→expand→pre…
jspaezp Apr 16, 2026
294c8bb
feat(speclib_build): integration tests, lib.rs, Taskfile recipes
jspaezp Apr 16, 2026
0a57a1a
fix(speclib_build): strip mods for Koina, convert annotation format
jspaezp Apr 16, 2026
69e070e
chore: update speclib build references from Python CLI to Rust CLI
jspaezp Apr 16, 2026
8f5be8b
feat(speclib_build): add --request-delay-ms for Koina rate limiting
jspaezp Apr 16, 2026
012df31
fix(speclib_build): better Koina response error reporting with body p…
jspaezp Apr 16, 2026
cce0da6
fix(speclib_build): skip peptides with non-standard AAs (U/B/J/Z/X), …
jspaezp Apr 16, 2026
0d455e0
feat(bench): add --koina-url flag for local/custom Koina server
jspaezp Apr 16, 2026
83d1871
fix(taskfile): reuse koina container to avoid re-downloading models
jspaezp Apr 16, 2026
efb7735
fix(bench): add request delay for public Koina rate limiting
jspaezp Apr 16, 2026
4318c94
fix(speclib_build): use modified sequence for precursor mz + Koina input
jspaezp Apr 16, 2026
558002c
feat(speclib_build): add Prosit_2023_intensity_timsTOF, make it default
jspaezp Apr 16, 2026
b72fdc8
fix: default RT tolerance to Unrestricted for iRT library compatibility
jspaezp Apr 16, 2026
f5b71c7
feat(speclib): add Skyline transition list CSV parser
jspaezp Apr 16, 2026
cecc8b1
chore: remove Python speclib_builder, superseded by Rust speclib_buil…
jspaezp Apr 16, 2026
5de6e55
chore: drop jupyter and ipykernel from workspace
jspaezp Apr 16, 2026
441793c
ci(release): publish speclib_build binary
jspaezp Apr 16, 2026
6ce45f3
chore: bump version to 0.28.0
jspaezp Apr 16, 2026
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2 changes: 1 addition & 1 deletion .github/workflows/release.yml
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ on:

env:
CARGO_TERM_COLOR: always
RELEASE_BINARIES: timsseek timsquery_cli timsquery_viewer
RELEASE_BINARIES: timsseek timsquery_cli timsquery_viewer speclib_build

jobs:
build-and-release:
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