This repository collects a handful of scripts and notebooks to reshape connectomics segmentation data for proofreading and various tasks.
Setup a conda environment and install required packages via requirements.txt
NEURD setup is described in the google doc
folder containing various scripts and example notebooks for data processing.
To run, setup a conda environment using requirements.txt
scripts for processing meshes using neurd
To run, setup docker as described by https://github.com/reimerlab/NEURD and copy scripts into docker container