fix: updated dependencies in setup.py and docker_test_requirements.txt #26

[zhouxiaochi]

• moved extras_require dependencies from setup to docker_test_requirements.txt for clarity as the dev options are all for running the tests

• hard specified dependency versions in docjker_test_requirements.txt, as the latest versions will not work

Details regarding to the dependency conflicts can be found in issue #26

[kok-foong]

Is there any plan to look into python_wrapper? There are also some similar issues, probably related to pytest-docker-compose and pyyaml, applying similar changes do not seem to fix it there. Fixing the python_wrapper is probably a higher priority than the derivation agent in my opinion

[sm453]

Is there any plan to look into python_wrapper?

Not at the moment. Perhaps @jb2197 would like to comment.

Fixing the python_wrapper is probably a higher priority than the derivation agent in my opinion

I certainly agree with that.

[jb2197]

Is there any plan to look into python_wrapper? There are also some similar issues, probably related to pytest-docker-compose and pyyaml, applying similar changes do not seem to fix it there.

If the issue is related to the error from installing pyyaml, one workaround is to fix pyyaml==5.3, see yaml/pyyaml#724 (comment)

Not at the moment. Perhaps @jb2197 would like to comment.

I would recommend implementing the CI/CD for python_wrapper as the priority. Perhaps this is already the intention of #28? It might be better to wait the improvements for paper revision is merged first #31. As part of your CI/CD, you might want to consider including docs deployment as well, see #29 and #30.

Fixing the python_wrapper is probably a higher priority than the derivation agent in my opinion

I certainly agree with that.

In my view the python_derivation_agent folder can be scrapped as all of its functionalities and tests are already integrated into python_wrapper.