posterior_neuruloid_patterning

Studying pattern emergence in micropatterned posterior neuruloids. Phenomenological modelling of patterning using reaction-diffusion and gene regulatory network. Quantifying pattern emergence of TBXT in posterior neuruloids.

Suggested set-up of virtual environment for project

Create virtual environment using conda, with standard libraries, listed in requirements.txt.

conda create -n neuruloids python=3.9.12
conda activate neuruloids
conda config --env --add channels conda-forge
conda install --file requirements.txt

Data storage

Git ignores folder 'data/' in this repo.