16S QIIME Data in R

This workflow requires:

• Outputs of 16S Amplicon Sequencing Workflow (https://github.com/TonyaWard/16S_Workflow)
• R and R studio
• Basic skills in working in R (recommended)

This tutorial shows you how to:

• Load QIIME v1.9.1 and lower ouptuts into R
• Plot alpha and beta diversity
• Run basic stats

You can follow the QIIME_data_R.rmd file by clicking it and viewing in a browser. There is also a commands.r file with all the r code ready for R studio.