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@mhweber mhweber commented Jan 28, 2026

Add new NNI functionality and vignette into develop for final testing and checking

mhweber and others added 30 commits July 25, 2025 09:48
Merge branch 'develop' into NNI_Vignette
# Please enter a commit message to explain why this merge is necessary,
# especially if it merges an updated upstream into a topic branch.
#
# Lines starting with '#' will be ignored, and an empty message aborts
# the commit.
…. Includes 3 ex of plots, and a few examples of data uses.
* Develop (#78)

* Create coverage.yaml

Init commit

* Update coverage.yaml

Make sure the report name is specified

* Update coverage.yaml

Try to get report from ./cobertura.xml

* Update coverage.yaml

Not there... but try being specific

* Update coverage.yaml

In case . is somewhere else be specific about where to write

* Update coverage.yaml

Simplify

* Update coverage.yaml

Point action to correct coverage report file

* Update coverage.yaml

Attempt permissions route to post comment vs PAT

* Trying Jeff's epar package to generate code cov badge

* incrementing dev version

* Metric categories (#79)

* updated params metrics function and added dontrun for examples

* test passing with updates to sc and lc params functions and new sc and lc get_metric_names functions

* Updating version

* changes to sc_get_params and lc_get_params

* fix to allow passing vectors of metric, state, county, region to both sc_get_data and sc_get_data

* remove global variables messages

* couple more updates to get_params functions and adding Mike as contributor

* updated documentation

* Increment develop branch

* added try catch to functions to fail gracefully and fixed column separator in get_metric_names

* added new get_metric_names example to Vignettes and last fixes to tryCatch in functions

* document new functions

* updated CRAN comments

* Ordered vignettes in github pages

* handling in vignettes for web service being down

* updated CRAN comments

* Updated NEWS and DESCRIPTION

* updated CRAN comments

* Switched most vignettes to articles

* updated CRAN comments and NEWS

---------

Co-authored-by: Justin Bousquin <bousquin.justin@epa.gov>
Co-authored-by: Michael Dumelle <Dumelle.Michael@epa.gov>
Merge branch 'NNI_Vignette' of https://github.com/USEPA/StreamCatTools into NNI_Vignette

# Conflicts:
#	README.md
…c_get_nni

Merge branch 'develop' into NNI_Vignette

# Conflicts:
#	README.md
@mhweber mhweber self-assigned this Jan 28, 2026
@mhweber mhweber added the enhancement New feature or request label Jan 28, 2026
@mhweber mhweber merged commit 1e5fe8f into develop Jan 28, 2026
1 check failed
mhweber added a commit that referenced this pull request Feb 3, 2026
* Develop (#78)

* Create coverage.yaml

Init commit

* Update coverage.yaml

Make sure the report name is specified

* Update coverage.yaml

Try to get report from ./cobertura.xml

* Update coverage.yaml

Not there... but try being specific

* Update coverage.yaml

In case . is somewhere else be specific about where to write

* Update coverage.yaml

Simplify

* Update coverage.yaml

Point action to correct coverage report file

* Update coverage.yaml

Attempt permissions route to post comment vs PAT

* Trying Jeff's epar package to generate code cov badge

* incrementing dev version

* Metric categories (#79)

* updated params metrics function and added dontrun for examples

* test passing with updates to sc and lc params functions and new sc and lc get_metric_names functions

* Updating version

* changes to sc_get_params and lc_get_params

* fix to allow passing vectors of metric, state, county, region to both sc_get_data and sc_get_data

* remove global variables messages

* couple more updates to get_params functions and adding Mike as contributor

* updated documentation

* Increment develop branch

* added try catch to functions to fail gracefully and fixed column separator in get_metric_names

* added new get_metric_names example to Vignettes and last fixes to tryCatch in functions

* document new functions

* updated CRAN comments

* Ordered vignettes in github pages

* handling in vignettes for web service being down

* updated CRAN comments

* Updated NEWS and DESCRIPTION

* updated CRAN comments

* Switched most vignettes to articles

* updated CRAN comments and NEWS

* NNI functionality and vignette (#85)

* Nutrients vignette for eventual merge into main branch

* Nutrients vignette in Rmd format rather than Qmd for vignette rendering

* typo in vignette

* Increment version number to 0.6.0.9000

* added lc_get_nni function

* added sc_get_nni function

* created lc_plot file and added lc_plot_nni function

* created sc_plot file and added sc_plot_nni function

* new functions for sc_plot and lc_plot codes

* updates to examples

* some changes to plot functions

* added nni plot and nni get data functions to examples in NNI vignette. Includes 3 ex of plots, and a few examples of data uses.

* Updates to Vignettes Patch (#84)

* Develop (#78)

* Create coverage.yaml

Init commit

* Update coverage.yaml

Make sure the report name is specified

* Update coverage.yaml

Try to get report from ./cobertura.xml

* Update coverage.yaml

Not there... but try being specific

* Update coverage.yaml

In case . is somewhere else be specific about where to write

* Update coverage.yaml

Simplify

* Update coverage.yaml

Point action to correct coverage report file

* Update coverage.yaml

Attempt permissions route to post comment vs PAT

* Trying Jeff's epar package to generate code cov badge

* incrementing dev version

* Metric categories (#79)

* updated params metrics function and added dontrun for examples

* test passing with updates to sc and lc params functions and new sc and lc get_metric_names functions

* Updating version

* changes to sc_get_params and lc_get_params

* fix to allow passing vectors of metric, state, county, region to both sc_get_data and sc_get_data

* remove global variables messages

* couple more updates to get_params functions and adding Mike as contributor

* updated documentation

* Increment develop branch

* added try catch to functions to fail gracefully and fixed column separator in get_metric_names

* added new get_metric_names example to Vignettes and last fixes to tryCatch in functions

* document new functions

* updated CRAN comments

* Ordered vignettes in github pages

* handling in vignettes for web service being down

* updated CRAN comments

* Updated NEWS and DESCRIPTION

* updated CRAN comments

* Switched most vignettes to articles

* updated CRAN comments and NEWS

---------

Co-authored-by: Justin Bousquin <bousquin.justin@epa.gov>
Co-authored-by: Michael Dumelle <Dumelle.Michael@epa.gov>

* change badge to grand total

* added package calls, native pipe

* changed source names, transformed output dataframes to tibbles

* Additions to package imports: ggpattern, patchwork, cowplot, tigris, ggplot2

* moved NNI vignette to articles

* remove library() calls

* corrected function call in get_nni examples

* a few modifications for namespace issues

* a few last updates to get NNI.Rmd to render

* rename `sc_nlcd` and `lc_nlcd` to `sc_get_nlcd` and `lc_get_nlcd` to create a more consistent API

---------

Co-authored-by: Markley <Markley.Selia@epa.gov>
Co-authored-by: Justin Bousquin <bousquin.justin@epa.gov>
Co-authored-by: Michael Dumelle <Dumelle.Michael@epa.gov>

* updating testing and documentation for new NNI functionality

* a couple updates to testing

* updates to documentation

* fix malformed example in sc_get_nni

* News for v 0.10.0 release

* some cleanup for R checks

* added tidyselect to suggests

* A couple last updates prior to CRAN minor update release

* Updates to GitHub pages for v0.10.0

* updates to new function syntax in testing

* slight fix to test for params

* mistakenly updated this test

---------

Co-authored-by: Justin Bousquin <bousquin.justin@epa.gov>
Co-authored-by: Michael Dumelle <Dumelle.Michael@epa.gov>
Co-authored-by: Markley <Markley.Selia@epa.gov>
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