Samtools#101

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necrolyte2 wants to merge 8 commits intomasterfrom

Commits on Nov 10, 2015

alignment reconstruction from reference
averagehat
committed

Commits on Nov 12, 2015

Commits on Nov 13, 2015

removed test failed bc required double import
averagehat
committed

Commits on Nov 25, 2015

added support for haplotype grouping
averagehat
committed

Commits on Dec 3, 2015