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Pca #102

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4a656d5
degen.py working with minimal tests
Jul 22, 2015
ea2eba6
Merge branch 'master' of https://github.com/VDBWRAIR/bio_pieces
Jul 22, 2015
b253729
Building up pca analysis for fasta sequence alignment
necrolyte2 Jul 31, 2015
e61449e
This notebook will build what we think is a correct 3d axis for pca a…
necrolyte2 Jul 31, 2015
03942de
Converted ipython notebook to script that takes in fasta file path an…
necrolyte2 Jul 31, 2015
e83d9e3
docs and allowed matrix to lookup 'all' key for values that are not i…
necrolyte2 Aug 3, 2015
15190a8
Added matplotlib to requirements. Tests now build documentation image…
necrolyte2 Aug 3, 2015
a9db6fa
Removed x,y and z tick labels. Addex X,Y Z axis labels. Added mean le…
necrolyte2 Aug 3, 2015
0b81095
ipython notebook for messing around with
necrolyte2 Aug 11, 2015
9eb6fd0
adding nologcapture. Removing specific emails for build notifications…
necrolyte2 Aug 12, 2015
159ec02
py26 ordereddict import check
necrolyte2 Aug 12, 2015
21b1a2a
Trying to fix matplotlib tkagg issue
necrolyte2 Aug 12, 2015
d5b0e74
StringIO,BytesIO compatibility fixed for py26/27 py3
necrolyte2 Aug 12, 2015
22300f1
Merge branch 'pca' of https://github.com/VDBWRAIR/bio_pieces into pca
Aug 12, 2015
963beb2
initial commit of make_pca
Aug 12, 2015
02c28de
added make_pca requirements: emperor,skbio
Aug 12, 2015
5117d65
fixed syntax bug in make_pca, added shorter test file for faster runtime
Aug 12, 2015
51f9020
aliased `python make_pca.py` as make_pca in setup.py
Aug 12, 2015
ab4c39b
added make_pca robot test
Aug 12, 2015
60e124f
fixed scikit-bio package name
Aug 12, 2015
a5da170
added blas to .travis.yml
Aug 12, 2015
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11 changes: 5 additions & 6 deletions .travis.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -3,19 +3,18 @@ python:
- "2.6"
- "2.7"
- "3.4"
before_install:
- "export DISPLAY=:99.0" # Should fix matplotlib errors
- "sh -e /etc/init.d/xvfb start"
install:
- sudo apt-get install gfortran libopenblas-dev liblapack-dev #needed for sci-*
- if [[ $TRAVIS_PYTHON_VERSION == '2.6' ]]; then pip install unittest2 ordereddict counter; fi
- if [[ $TRAVIS_PYTHON_VERSION == '3.4' ]]; then pip install robotframework-python3; else pip install robotframework; fi
- pip install -r requirements.txt
- pip install -r tests/requirements.txt
- python setup.py develop
script:
- nosetests tests --with-coverage --cover-erase --cover-package=bio_pieces
- nosetests tests --with-coverage --cover-erase --cover-package=bio_pieces --nologcapture
- pybot tests/*.robot
after_success:
- coveralls

notifications:
email:
recipients:
- michael.panciera.work@gmail.com
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