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host_map counts unmapped only if both mates unmapped#291

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averagehat wants to merge 2 commits intomasterfrom
hostmap-droppair
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host_map counts unmapped only if both mates unmapped#291
averagehat wants to merge 2 commits intomasterfrom
hostmap-droppair

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Closes #286


echo "[stats] paired stats"
samtools flagstat paired.bam

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Can you add a comment above each of the commands
# Extracts unmapped read names as well as their mate
# Extracts unmapped reads, leaving unpaired mates

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done

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