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  1. machine-learning-portfolio machine-learning-portfolio Public

    Machine learning portfolio with hands-on projects, mostly in genomics. Includes Jupyter notebooks with data preprocessing, model training, evaluation, and interpretability.

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  2. GenomeAssemblyTools GenomeAssemblyTools Public

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  3. MUMandCo MUMandCo Public

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    MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation

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  4. VLoegler.github.io VLoegler.github.io Public

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  5. HaploDBShinyApp HaploDBShinyApp Public

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  6. FaSTLMM_Runner FaSTLMM_Runner Public

    Scripts to run GWAS using FaST-LMM and perform permutations test to detect QTL.

    Python