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DisplacementsAnalysis

DisplacementsAnalysis computes atomic displacements relative to an optional reference frame.

One-Command Install

curl -sSL https://raw.githubusercontent.com/VoltLabs-Research/CoreToolkit/main/scripts/install-plugin.sh | bash -s -- DisplacementsAnalysis

CLI

Usage:

displacement-analysis <lammps_file> [output_base] [options]

Arguments

Argument Required Description Default
<lammps_file> Yes Input LAMMPS dump file.
[output_base] No Base path for output files. derived from input
--reference <file> No Reference LAMMPS dump file. If omitted, the current frame is used. current frame
--mic No Use minimum image convention. true
--affineMapping <mode> No Affine mapping mode: noMapping, toReferenceCell, toCurrentCell. noMapping
--threads <int> No Maximum worker threads. auto
--help No Print CLI help.

About

Calculates atomic displacement vectors between reference and deformed configurations. Tracks atom movements, identifies displaced atoms, and computes displacement magnitudes for diffusion analysis.

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