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aaaaaaarya edited this page Feb 7, 2024
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Welcome to the BioNix-GettingStarted wiki! Navigate to the following links depending on what you're looking for:
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Onboarding Checklist: A list of recommended readings and tasks to go through to start off with BioNix
- Guidelines and steps for onboarding WEHI interns to BioNix
Otherwise, here are some key introductory documents to explore:
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BioNix Overview: Get a brief overview of why we work on BioNix, and what it does.
- Introduction
- The Issue: Data analysis and reproducibility in bioinformatics
- Where does BioNix come in?
- Resources
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Virus BreakEnd Project: Overview
- Overview of the Virus BreakEnd project
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Kraken2
- Details on Kraken2 within the Virus BreakEnd project
- Migrating Kraken2 from Bash to Nix
- FAQ: Frequently Asked Questions about BioNix
- Glossary: Definitions of key terms used in BioNix documentation
(Recommended by Siyu Liang, a Student with Biology and Genomics Background but no prior knowledge of Nix):
- Watch Aurelia and Janya's Student Presentation for a general understanding of concepts
- Refer to the Glossary to check your understanding of key terms
- Read the BioNix Journal Article for an in-depth understanding of BioNix and real-world examples.
- Practice in Day 1 - BioNix Workshop by Justin to learn and practice the Nix language.
- Follow the Onboarding Checklist to ensure comprehensive learning
- Read the Virus BreakEnd Project: Overview for explanations of high-level concepts and technical tools.
- Begin Implementation by starting with the BioNix GettingStarted guide.