Plant Pigment Analyzer

pipeline_script.py

Usage: python pipeline_script.py <path to dataset directory> <path to result directory>

The script expects that files in the dataset directory follow the pattern PLANTID_Vein_PETALID_DATE and PLANTID_Spot_PETALID_DATE, and that the result directory has alreacy been created.

Setup and Dependencies

• Before you start, install:
  • Git
  • Anaconda Python
• Use Git to clone this repository
• Use Anaconda to install the package scikit-learn
• Use Anaconda to create and activate a python3 environment for this project
• Within that environment, use pip to install opencv
  • This project requires OpenCV 4.4+, and the developers have found the most consistent success with installing the pip package opencv-contrib-python