Export coco #1425
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Documents the design for exporting encounter search results to COCO format for MIEW-ID training. Includes JSON schema, individual ID mapping strategy, filtering rules, and code architecture. Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Detailed step-by-step plan for implementing COCO format export: - EncounterCOCOExportFile core class with JSON building - EncounterSearchExportCOCO servlet - web.xml registration - UI integration in exportSearchResults.jsp - Unit tests Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Create the initial skeleton class for COCO format export with constructor and placeholder writeTo method. Add Apache Commons Compress dependency to pom.xml for tar.gz support. Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Reverts unintentional reformatting while preserving the COCO export additions: - pom.xml: commons-compress dependency - web.xml: COCO servlet definition, mapping, and security rule Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Codecov Report✅ All modified and coverable lines are covered by tests. Additional details and impacted files@@ Coverage Diff @@
## main #1425 +/- ##
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Coverage 47.29% 47.29%
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Files 272 272
Lines 9722 9722
Branches 2860 2952 +92
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Hits 4598 4598
+ Misses 4893 4888 -5
- Partials 231 236 +5
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Switch from tar.gz (commons-compress) to ZIP format using built-in java.util.zip. This removes the external dependency and produces a more user-friendly format for biologists. Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
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[Plain-text summary description of the solution. Include any class updates, new or edited functions, significant changes to UX, etc]
PR fixes #1424
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