Skip to content

Implement writing to same h5md files on multiple steps #39

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
J-Hizzle wants to merge 29 commits into
base: main
Choose a base branch
from
Open

Implement writing to same h5md files on multiple steps #39

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
29 commits
Select commit Hold shift + click to select a range
fcb9c6a
split open, write and close functionalities of H5MD files, Ref #038
J-Hizzle Mar 5, 2025
09b5d85
split writeBox function, Ref #038
J-Hizzle Mar 6, 2025
8dce55b
isolated step-wise writing of step number, Ref #038
J-Hizzle Mar 6, 2025
39f8156
major redesigns incorporating new Identifiers struct, Ref #038
J-Hizzle Mar 7, 2025
e29a11d
first attemps to make step dataset extendable, Ref #038
J-Hizzle Mar 7, 2025
6fb3507
absorbed identifiers into DumpH5MDParallel, Ref #038
J-Hizzle Mar 7, 2025
8878071
enabled printing each step to file, Ref #038
J-Hizzle Mar 7, 2025
dd0e128
added printing of simulation time, Ref #038
J-Hizzle Mar 7, 2025
ac3bdc0
generalized time and step creation, Ref #038
J-Hizzle Mar 7, 2025
1d107c0
generalized appending of small data and started parallel append, Ref …
J-Hizzle Mar 7, 2025
8fe281c
enabled appending box edge vectors to H5MD file, Ref #038
J-Hizzle Mar 10, 2025
8ff2037
added charges and positions creation, appending and closing, Ref #038
J-Hizzle Mar 10, 2025
7043890
primitive way to dump all data into H5MD file stepwise, Ref #038
J-Hizzle Mar 10, 2025
ca749f1
hotfixes and added appendDataParallel to write many-particle info eff…
J-Hizzle Mar 10, 2025
4cc5bca
changed test output to .h5md, Ref #038
J-Hizzle Mar 10, 2025
2c40240
fixed clang-format, Ref #038
J-Hizzle Mar 10, 2025
3cf56de
fixed errors for H5MD support switched off, Ref #038
J-Hizzle Mar 10, 2025
7e1ea19
hotfix, Ref #038
J-Hizzle Mar 10, 2025
fca7c9f
hotfix, Ref #038
J-Hizzle Mar 10, 2025
e9be17b
hotfix, Ref #038
J-Hizzle Mar 10, 2025
951f7d4
clang-tidy fixes, Ref #038
J-Hizzle Mar 10, 2025
c7bc8b1
clang-tidy fixes, Ref #038
J-Hizzle Mar 10, 2025
2864acc
renamed particleGroupName_ member to particleSubGroupName_, Ref #038
J-Hizzle Mar 21, 2025
e29cea0
clang-format fix, Ref #038
J-Hizzle Mar 21, 2025
7b619b5
added subdomain corners and ghostLayerThickness to open for step-wise…
J-Hizzle Apr 1, 2025
ca8173d
enabled restoring any step of H5MD file and added two tests, Ref 0#38
J-Hizzle Apr 2, 2025
3331bf0
clang-format fixes, Ref 0#38
J-Hizzle Apr 2, 2025
e943fa0
bugfix, Ref 0#38
J-Hizzle Apr 2, 2025
2b43aaf
clang-format fixes, Ref #038
J-Hizzle May 20, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Loading