title	My_Project.md
author	First Last
date	2023-12-01
output	github_document

Title of My Project

Background/Overview

Describe here the background and motiviation for completing this project.

References:

• Link 1
• Link 2
• Link 3

Project Aims

Aim 1:

Aim 2:

Analysis Plan

Data Preprocessing

• Step 1: Link to script.
• Step 2: Link to script.

Aim 1

• Analysis 1: We will use this software: ____ to do ____.

Link to script here.

• Analysis 2: We will write custom code to ____.

Link to script here.

Aim 2

• Analysis 1
• Analysis 2

Interpretation

• Data visualization: We will use ggplot in R to make plots.

Data Structure

Project directory:

Tree diagram for data, code, outputs within the project directory.

project_directory # The working directory
├── data
│   ├── raw_data.csv 
│   └── processed_data.csv 
├── output
│   ├── results 
│   │     ├── results_aim_1.csv # write a note about what this file contains.
│   │     └── results_aim_2.csv
│   └── visualization 
│         └── plots_aim_1.png
│         └── plots_aim_2.png
└── scripts 
    ├── data_processing.Rmd
    ├── analyses_aim_1.1.sh
    ├── analyses_aim_1.2.Rmd
    ├── analyses_aim_2.1.py
    └── data_visualziation.Rmd

Expected Results

Describe your expected results here.

If the project is completed, describe the format, location of output data.

Responsibilities and Acknowledgements

Caroline is responsible for data preprocessing. Ale will conduct analyses described in Aim 1. Jake will perform analyses in Aim 2. Alexis will perform data visualization.

This work is funded by the following grants:

• Grant 1
• Grant 2