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@mattjones315 mattjones315 released this 30 Aug 21:57
· 48 commits to master since this release
v3.0.0
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Learn about vigilant mode.

This release includes the PhyloVision module, allowing users to use concepts from the original VISION pipeline to identify signatures that are autocorrelated on phylogenies, such as those generated with CRISPR/Cas9-based lineage tracers or from B-cell receptor (BCR) sequencing.

This release also supports the analysis of expression data with Hotspot. This analysis framework identifies modules of genes are autocorrelated with one another with respect to some cell-cell similarity metric (e.g. a phylogeny or some low-dimensional embedding).

While most functionality from version < 3.0.0 is preserved, we have deprecated the Trajectory and PC Annotator pipelines. If this is important to your work, you can use VISION version 2.1.0 which is still stable.

To get you started with the new functionality, we have new vignettes on our main documentation website.

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