This repository contains the notebooks and scripts to reproduce the analysis of the CytoVI manuscript:
CytoVI: Deep generative modeling of antibody-based single cell technologies https://doi.org/10.1101/2025.09.07.674699
The repo is structured as follows:
- Figure 1: Distribution evaluation and Posterior predictive checks (PPCs)
- Figure 2: Latent space interpretability and batch integration
- Figure 3: Benchmarking of imputation performance and generation of the B cell maturation atlas
- Figure 4: Cross-technology integration and analysis of the BNHL cohort
- Figure 5: Analysis of clinical flow cytometry samples from CLL patients