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190 followers · 55 following

Achievements

Achievement: Starstruckx2

Achievements

Achievement: Starstruckx2

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Organizations

@SolvingLab

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Zaoqu-Liu/README.md

PhD Student · Chinese Academy of Medical Sciences & Peking Union Medical College

Google Scholar ORCID ResearchGate

Research Focus

Developing computational methods and AI systems for tumor microenvironment analysis, multi-omics integration, and biomedical knowledge discovery.

Featured Publications

Repository Journal Description
MOFS Nature Communications Multimodality Fusion Subtyping
IRLS Nature Communications Immune-Related lncRNA Signature
GINS eLife Gene Interaction Perturbation Network
AIDPS eLife AI-Derived Prognostic Signature
TimeCCI Cell Reports Temporal Cell-Cell Interaction
SurvivalML Cancer Letters ML Prognostic Modeling

Original Software

AI for Science

ScienceClaw · PubMedRAG · LitChain · GeneRAG · Aividence · BioKG-Builder · llmflow

Single-cell & Spatial Omics

NewCCI · scMetaLink · SVG

Biomarker & Utilities

BioEnricher · ggforge · EasyDNB · SafeMapper · OpenTargetsR · TIME

Enhanced Forks

30+ repositories with substantial modifications:

Cell-Cell Communication: liana · SpaTalk · nichenetr · multinichenetr · iTALK · Connectome · COMMOT · Chunk

Single-Cell Analysis: CellOracle · scGate · SCENT · scTenifoldKnk · scPAS · recall · scimilarity · SAMap

Spatial Transcriptomics: STRIDE · SpaGE · cytospace · fastCNV

CNV & Metabolism: SCEVAN · METAFlux · MAGIC

Trajectory & Dynamics: tradeSeq · Cepo · Refate

Multi-omics: LRAcluster · RGCCA · genekitr2 · GSReg · ssgsea.GBM.classification

Others: OmnipathR · MultiK · SecAct

📧 liuzaoqu@163.com · 📍 Guangzhou, China · 💬 Discussions

Bilibili WeChat

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  1. SolvingLab/SLCPTAC SolvingLab/SLCPTAC Public

    Multi-Omics Analysis Toolkit for CPTAC Cancer Database

    R

  2. SolvingLab/SLTCGA SolvingLab/SLTCGA Public

    Multi-Omics Analysis Toolkit for TCGA Cancer Database

    R

  3. OpenTargetsR OpenTargetsR Public

    Enhanced R Interface for Open Targets Platform

    R 1