Recombinantplots #2
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…d recombinationgradient plots.
… and plot branchlength (distance from tip to parent), excluded root from recombinantgradient analyses.
…bination into recombinantplots
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Added scripts to plot bootstrap values against tip branch length or tip to tip minimal distance. Added recombinantgradients, where trees which differ in the percentage of a certain sequence that is used to create the recombinant are created and the results are plotted.