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correctly assigning institutions and collabs to nested authors in jats #167

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Merged
mugdhapolimera merged 1 commit into from
Mar 26, 2025
Merged

correctly assigning institutions and collabs to nested authors in jats #167

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17 changes: 8 additions & 9 deletions adsingestp/parsers/jats.py
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Original file line number Diff line number Diff line change
Expand Up @@ -381,12 +381,15 @@ def parse(self, article_metadata):
if contrib.find("collab") and contrib.find("collab").find(
"institution"
):
collabtag = copy(contrib.find("collab").find("institution"))
collab_text = (
contrib.find("collab").find("institution").decode_contents()
)
elif collab_name:
collab_text = collab_name
else:
collabtag = None

if not collabtag and collab_name:
collabtag_string = "<collab>" + collab_name + "</collab>"
collab_text = None
if collab_text:
collabtag_string = "<collab>" + collab_text + "</collab>"
collabtag = bs4.BeautifulSoup(collabtag_string, "xml").collab

if not collabtag:
Expand All @@ -400,10 +403,6 @@ def parse(self, article_metadata):
# check if collabtag is present in the author author attributes
collab = contrib.find("collab")

# Springer collab info for nested authors is given as <institution>
if not collab:
collab = contrib.find("institution")

if collab:
if type(collab.contents[0].get_text()) == str:
collab_name = collab.contents[0].get_text().strip()
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