fix: remove orphaned has_permissions

[agritheory]

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[github-actions]

📝 Draft Changelog Entry

Changelog

This update removes unused permission-checking code that was no longer being referenced in the application. The changes clean up the codebase by eliminating orphaned functions and updating related configuration files to maintain consistency.

This changelog entry was automatically generated by the Changelog Generator Action.

[github-actions]

Coverage Report

File	Stmts	Miss	Cover	Missing
__init__.py	11	5	54%	13–14, 20–22
commands.py	35	35	0%	4–6, 9–11, 17–20, 23, 26–27, 49–51, 53–54, 56, 65, 68–72, 75–76, 85–87, 89–90, 92, 94, 97
customize.py	25	25	0%	4–5, 7, 10–12, 15–22, 27–35, 47–48
hooks.py	15	0	100%
install.py	36	36	0%	4–7, 10–11, 14–18, 21–27, 30–34, 36–39, 41–49
migration.py	196	118	39%	25, 46, 68–69, 88–89, 96, 115, 118–120, 123–125, 158–159, 161–162, 166–168, 171–172, 187, 196–197, 199–203, 205–210, 212, 219–221, 223, 225–226, 228, 235–236, 238–242, 244–247, 249, 254–257, 259–268, 270–279, 281–282, 284–285, 287–288, 290–294, 298–301, 305, 307–308, 310, 312–314, 317–318, 320–321, 323–329, 331–332, 334, 336
cloud_storage
__init__.py	0	0	100%
cloud_storage/doctype
__init__.py	0	0	100%
cloud_storage/doctype/file_association
__init__.py	0	0	100%
file_association.py	3	0	100%
cloud_storage/doctype/file_version
__init__.py	0	0	100%
file_version.py	3	0	100%
cloud_storage/overrides
file.py	404	166	58%	65, 75, 95, 118, 120, 169, 174, 181, 190, 196, 229, 239–248, 250–258, 269, 274–275, 279–280, 282–287, 289–290, 292–295, 297–298, 300–301, 316, 319–320, 322, 325, 333–334, 337, 340, 346–347, 349, 351–361, 373–378, 395–399, 402–404, 438, 444, 450, 456, 462, 468, 478, 480–482, 486, 494–496, 498, 513, 516, 527–531, 537–538, 540, 563–567, 579–580, 625–626, 629, 632–641, 648–649, 651–653, 656–657, 662–664, 666, 671–674, 679, 681, 693–694, 696, 701–705, 707, 718–724
config
__init__.py	0	0	100%
desktop.py	3	3	0%	4, 7–8
docs.py	6	6	0%	4, 6–8, 12–13
tests
conftest.py	43	1	97%	54
test_file.py	173	7	95%	89, 174, 206, 208–210, 223
TOTAL	953	402	57%