Bump bandit from 1.9.3 to 1.9.4 by dependabot[bot] · Pull Request #208 · alpha-unito/streamflow-postgresql

dependabot · 2026-02-25T10:56:36Z

Bumps bandit from 1.9.3 to 1.9.4.

Release notes

1.9.4

What's Changed

chore: fixed some typos in comments by @jakob1379 in PyCQA/bandit#1351

Bump docker/login-action from 3.6.0 to 3.7.0 by @dependabot[bot] in PyCQA/bandit#1353

Bump docker/build-push-action from 6.18.0 to 6.19.2 by @dependabot[bot] in PyCQA/bandit#1357

Fix B613 crash when reading from stdin by @worksbyfriday in PyCQA/bandit#1361

Include filename in nosec 'no failed test' warning by @worksbyfriday in PyCQA/bandit#1363

Fix B615 false positive when revision is set via variable by @worksbyfriday in PyCQA/bandit#1358

Lower version guard in check_ast_node to Python 3.12 by @rcgray in PyCQA/bandit#1355

Fix B106 reporting wrong line number on multiline function calls by @worksbyfriday in PyCQA/bandit#1360

New Contributors

@jakob1379 made their first contribution in PyCQA/bandit#1351

@worksbyfriday made their first contribution in PyCQA/bandit#1361

@rcgray made their first contribution in PyCQA/bandit#1355

Full Changelog: PyCQA/bandit@1.9.3...1.9.4

Commits

92ae8b8 Fix B106 reporting wrong line number on multiline function calls (#1360)
c8c8a55 Lower version guard in check_ast_node to Python 3.12 (#1355)
8f2f928 Fix B615 false positive when revision is set via variable (#1358)
e27493f Include filename in nosec 'no failed test' warning (#1363)
b69b336 Fix B613 crash when reading from stdin (#1361)
e418b79 Bump docker/build-push-action from 6.18.0 to 6.19.2 (#1357)
ff646fd Bump docker/login-action from 3.6.0 to 3.7.0 (#1353)
c0def6c chore: fixed some typos in comments (#1351)
See full diff in compare view

Note
Automatic rebases have been disabled on this pull request as it has been open for over 30 days.

GlassOfWhiskey · 2026-04-11T18:44:31Z

@dependabot rebase

Bumps [bandit](https://github.com/PyCQA/bandit) from 1.9.3 to 1.9.4. - [Release notes](https://github.com/PyCQA/bandit/releases) - [Commits](PyCQA/bandit@1.9.3...1.9.4) --- updated-dependencies: - dependency-name: bandit dependency-version: 1.9.4 dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com>

codecov · 2026-04-11T18:55:02Z

❌ 1 Tests Failed:

Tests completed	Failed	Passed	Skipped
409	1	408	3

View the full list of 28 ❄️ flaky test(s)

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::all_non_null_all_null

Flake rate in main: 60.00% (Passed 2 times, Failed 3 times)

Stack Traces | 1.97s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/test-index.yaml#all_non_null_all_null
doc: 'pickValue: all_non_null will produce a list, even if empty'
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/cond-wf-007.cwl
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/val.0.job.yaml
output:
  out1: []
tags:
- conditional
- inline_javascript
- multiple_input
- workflow
line: '105'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::cat_synthetic_file

Flake rate in main: 60.00% (Passed 2 times, Failed 3 times)

Stack Traces | 0.292s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/synth-file-job.yml
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/synth-file.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#cat_synthetic_file
doc: Test the generation of a synthetic file with inline contents.
output:
  sequence:
    class: File
    checksum: sha1$5d64b71392b1e00a3ad893db02d381d58262c2d6
    size: 7
tags:
- required
- command_line_tool
line: '3201'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::condifional_scatter_on_nonscattered_true

Flake rate in main: 15.38% (Passed 22 times, Failed 4 times)

Stack Traces | 16.7s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/test-index.yaml#condifional_scatter_on_nonscattered_true
doc: 'Simple scatter: conditional on a non scattered variable (True)'
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/cond-wf-009.cwl
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/cond16.job.yaml
output:
  out1:
  - foo 1
  - foo 2
  - foo 3
  - foo 4
  - foo 5
  - foo 6
tags:
- conditional
- inline_javascript
- scatter
- workflow
line: '137'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::conditionals_multi_scatter

Flake rate in main: 60.00% (Passed 2 times, Failed 3 times)

Stack Traces | 1.02s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/test-index.yaml#conditionals_multi_scatter
doc: Scatter two steps, flatten result + pickValue
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/cond-wf-013.cwl
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/cond20.job.yaml
output:
  out1:
  - foo 2
  - foo 4
  - foo 6
  - bar 1
  - bar 3
  - bar 5
tags:
- conditional
- inline_javascript
- scatter
- multiple_input
- workflow
line: '180'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::conditionals_nested_cross_scatter

Flake rate in main: 60.00% (Passed 2 times, Failed 3 times)

Stack Traces | 0.231s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/test-index.yaml#conditionals_nested_cross_scatter
doc: nested cross product scatter with condition on one dimension
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/cond-wf-011.cwl
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/cond18.job.yaml
output:
  out1:
  - - - 
      - '112'
      - 
      - '114'
    - - 
      - '122'
      - 
      - '124'
    - - 
      - '132'
      - 
      - '134'
  - - - 
      - '212'
      - 
      - '214'
    - - 
      - '222'
      - 
      - '224'
    - - 
      - '232'
      - 
      - '234'
tags:
- conditional
- inline_javascript
- scatter
- workflow
line: '153'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::continuation

Flake rate in main: 60.00% (Passed 2 times, Failed 3 times)

Stack Traces | 0.411s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/string-interpolation/test-index.yaml#continuation
doc: Line continuations in bash scripts should behave correctly
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/string-interpolation/bash-line-continuation.cwl
output:
  out:
    checksum: sha1$47d8510dce768c907f4dea6bcaf90f8d59cb265c
    class: File
    location: out.txt
    size: 48
tags:
- inline_javascript
- command_line_tool
line: '2'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::continuation_expression

Flake rate in main: 60.00% (Passed 2 times, Failed 3 times)

Stack Traces | 0.891s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/string-interpolation/test-index.yaml#continuation_expression
doc: Line continuations in bash scripts should always behave correctly
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/string-interpolation/bash-line-continuation-with-expression.cwl
output:
  out:
    checksum: sha1$47d8510dce768c907f4dea6bcaf90f8d59cb265c
    class: File
    location: out.txt
    size: 48
tags:
- inline_javascript
- command_line_tool
line: '14'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::cores_float

Flake rate in main: 60.00% (Passed 2 times, Failed 3 times)

Stack Traces | 2.62s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cores_float.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#cores_float
doc: Test float value for coresMin(Max) is rounded up in runtime.cores
output:
  output:
    location: cores.txt
    size: 2
    class: File
    checksum: sha1$7448d8798a4380162d4b56f9b452e2f6f9e24e7a
tags:
- resource
- command_line_tool
line: '3174'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::cwl_requirements_override_static

Flake rate in main: 60.00% (Passed 2 times, Failed 3 times)

Stack Traces | 10.6s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-job4.yaml
output:
  out:
    class: File
    checksum: sha1$715e62184492851512a020c36ab7118eca114a59
    location: out
    size: 23
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#cwl_requirements_override_static
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-tool3.cwl
doc: Test conflicting requirements in input document via EnvVarRequirement
tags:
- command_line_tool
- input_object_requirements
line: '2824'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::direct_optional_nonnull_result_nojs

Flake rate in main: 60.00% (Passed 2 times, Failed 3 times)

Stack Traces | 0.818s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/test-index.yaml#direct_optional_nonnull_result_nojs
doc: simplest conditional pattern (false), no javascript
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/cond-wf-001_nojs.cwl
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/test-false.yml
output:
  out1:
tags:
- conditional
- workflow
line: '198'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::direct_optional_null_result_nojs

Flake rate in main: 60.00% (Passed 2 times, Failed 3 times)

Stack Traces | 1.39s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/test-index.yaml#direct_optional_null_result_nojs
doc: simplest conditional pattern (true), no javascript
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/cond-wf-001_nojs.cwl
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/test-true.yml
output:
  out1: foo 23
tags:
- conditional
- workflow
line: '190'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::direct_required_nojs

Flake rate in main: 60.00% (Passed 2 times, Failed 3 times)

Stack Traces | 1.72s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/test-index.yaml#direct_required_nojs
doc: Conditional using intermediate AbstractWorkflowStep.in input; no javascript
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/cond-wf-002_nojs.cwl
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/val.1.job.yaml
output:
  out1:
tags:
- conditional
- workflow
line: '206'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::first_non_null_first_non_null

Flake rate in main: 60.00% (Passed 2 times, Failed 3 times)

Stack Traces | 7.23s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/test-index.yaml#first_non_null_first_non_null
doc: 'pickValue: first_non_null first item is non null'
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/cond-wf-003.1.cwl
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/val.0.job.yaml
output:
  out1: foo 0
tags:
- conditional
- inline_javascript
- multiple_input
- workflow
line: '45'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::first_non_null_second_non_null

Flake rate in main: 60.00% (Passed 2 times, Failed 3 times)

Stack Traces | 0.248s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/test-index.yaml#first_non_null_second_non_null
doc: 'pickValue: first_non_null second item is non null'
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/cond-wf-003.1.cwl
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/val.3.job.yaml
output:
  out1: foo 3
tags:
- conditional
- inline_javascript
- multiple_input
- workflow
line: '60'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::initial_workdir_output_glob

Flake rate in main: 60.00% (Passed 2 times, Failed 3 times)

Stack Traces | 0.281s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/initialworkdirrequirement-docker-out-job.json
output:
  OUTPUT:
    checksum: sha1$aeb3d11bdf536511649129f4077d5cda6a324118
    location: ref.fasta
    secondaryFiles:
    - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      location: ref.fasta.fai
      class: File
      size: 0
    class: File
    size: 12010
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/initialworkdir-glob-fullpath.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#initial_workdir_output_glob
doc: Test full path glob output of InitialWorkDir
tags:
- initial_work_dir
- command_line_tool
line: '2836'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::initial_workdir_secondary_files_expr

Flake rate in main: 23.08% (Passed 20 times, Failed 6 times)

Stack Traces | 88.8s run time

CWL test execution failed. 
expected: {
    "indexedfile": {
        "checksum": "sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376",
        "class": "File",
        "location": "input.txt",
        "secondaryFiles": [
            {
                "checksum": "sha1$1f6fe811644355974cdd06d9eb695d6e859f3b44",
                "class": "File",
                "location": "input.txt.idx1",
                "size": 1500
            },
            {
                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                "class": "File",
                "location": "input.idx2",
                "size": 0
            },
            {
                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                "class": "File",
                "location": "input.txt.idx3",
                "size": 0
            },
            {
                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                "class": "File",
                "location": "input.txt.idx4",
                "size": 0
            },
            {
                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                "class": "File",
                "location": "input.txt.idx5",
                "size": 0
            },
            {
                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                "class": "File",
                "location": "input.idx6.txt",
                "size": 0
            },
            {
                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                "class": "File",
                "location": "input.txt.idx7",
                "size": 0
            },
            {
                "checksum": "sha1$47a013e660d408619d894b20806b1d5086aab03b",
                "class": "File",
                "location": "hello.txt",
                "size": 13
            },
            {
                "class": "Directory",
                "listing": [
                    {
                        "basename": "index",
                        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                        "class": "File",
                        "location": "index",
                        "size": 0
                    }
                ],
                "location": "input.txt_idx8"
            }
        ],
        "size": 1111
    },
    "outfile": {
        "checksum": "sha1$e2dc9daaef945ac15f01c238ed2f1660f60909a0",
        "class": "File",
        "location": "result.txt",
        "size": 142
    }
}
got: {
    "indexedfile": {
        "basename": "input.txt",
        "checksum": "sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376",
        "class": "File",
        "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
        "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt",
        "nameext": ".txt",
        "nameroot": "input",
        "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt",
        "secondaryFiles": [
            {
                "basename": "input.txt.idx1",
                "checksum": "sha1$1f6fe811644355974cdd06d9eb695d6e859f3b44",
                "class": "File",
                "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
                "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx1",
                "nameext": ".idx1",
                "nameroot": "input.txt",
                "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx1",
                "size": 1500
            },
            {
                "basename": "input.idx2",
                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                "class": "File",
                "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
                "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.idx2",
                "nameext": ".idx2",
                "nameroot": "input",
                "path": ".../pytest-0/popen-gw2/unlabled_test5/input.idx2",
                "size": 0
            },
            {
                "basename": "input.txt.idx3",
                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                "class": "File",
                "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
                "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx3",
                "nameext": ".idx3",
                "nameroot": "input.txt",
                "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx3",
                "size": 0
            },
            {
                "basename": "input.txt.idx4",
                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                "class": "File",
                "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
                "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx4",
                "nameext": ".idx4",
                "nameroot": "input.txt",
                "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx4",
                "size": 0
            },
            {
                "basename": "input.txt.idx5",
                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                "class": "File",
                "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
                "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx5",
                "nameext": ".idx5",
                "nameroot": "input.txt",
                "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx5",
                "size": 0
            },
            {
                "basename": "input.idx6.txt",
                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                "class": "File",
                "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
                "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.idx6.txt",
                "nameext": ".txt",
                "nameroot": "input.idx6",
                "path": ".../pytest-0/popen-gw2/unlabled_test5/input.idx6.txt",
                "size": 0
            },
            {
                "basename": "input.txt.idx7",
                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                "class": "File",
                "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
                "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx7",
                "nameext": ".idx7",
                "nameroot": "input.txt",
                "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx7",
                "size": 0
            },
            {
                "basename": "hello.txt",
                "checksum": "sha1$47a013e660d408619d894b20806b1d5086aab03b",
                "class": "File",
                "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
                "location": "file://.../pytest-0/popen-gw2/unlabled_test5/hello.txt",
                "nameext": ".txt",
                "nameroot": "hello",
                "path": ".../pytest-0/popen-gw2/unlabled_test5/hello.txt",
                "size": 13
            },
            {
                "basename": "input.txt_idx8",
                "class": "Directory",
                "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
                "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt_idx8",
                "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt_idx8"
            }
        ],
        "size": 1111
    },
    "outfile": {
        "basename": "result.txt",
        "checksum": "sha1$e2dc9daaef945ac15f01c238ed2f1660f60909a0",
        "class": "File",
        "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
        "location": "file://.../pytest-0/popen-gw2/unlabled_test5/result.txt",
        "nameext": ".txt",
        "nameroot": "result",
        "path": ".../pytest-0/popen-gw2/unlabled_test5/result.txt",
        "size": 142
    }
}
caused by: failed comparison for key 'indexedfile': expected: {
    "checksum": "sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376",
    "class": "File",
    "location": "input.txt",
    "secondaryFiles": [
        {
            "checksum": "sha1$1f6fe811644355974cdd06d9eb695d6e859f3b44",
            "class": "File",
            "location": "input.txt.idx1",
            "size": 1500
        },
        {
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "class": "File",
            "location": "input.idx2",
            "size": 0
        },
        {
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "class": "File",
            "location": "input.txt.idx3",
            "size": 0
        },
        {
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "class": "File",
            "location": "input.txt.idx4",
            "size": 0
        },
        {
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "class": "File",
            "location": "input.txt.idx5",
            "size": 0
        },
        {
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "class": "File",
            "location": "input.idx6.txt",
            "size": 0
        },
        {
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "class": "File",
            "location": "input.txt.idx7",
            "size": 0
        },
        {
            "checksum": "sha1$47a013e660d408619d894b20806b1d5086aab03b",
            "class": "File",
            "location": "hello.txt",
            "size": 13
        },
        {
            "class": "Directory",
            "listing": [
                {
                    "basename": "index",
                    "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                    "class": "File",
                    "location": "index",
                    "size": 0
                }
            ],
            "location": "input.txt_idx8"
        }
    ],
    "size": 1111
}
got: {
    "basename": "input.txt",
    "checksum": "sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376",
    "class": "File",
    "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
    "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt",
    "nameext": ".txt",
    "nameroot": "input",
    "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt",
    "secondaryFiles": [
        {
            "basename": "input.txt.idx1",
            "checksum": "sha1$1f6fe811644355974cdd06d9eb695d6e859f3b44",
            "class": "File",
            "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
            "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx1",
            "nameext": ".idx1",
            "nameroot": "input.txt",
            "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx1",
            "size": 1500
        },
        {
            "basename": "input.idx2",
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "class": "File",
            "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
            "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.idx2",
            "nameext": ".idx2",
            "nameroot": "input",
            "path": ".../pytest-0/popen-gw2/unlabled_test5/input.idx2",
            "size": 0
        },
        {
            "basename": "input.txt.idx3",
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "class": "File",
            "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
            "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx3",
            "nameext": ".idx3",
            "nameroot": "input.txt",
            "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx3",
            "size": 0
        },
        {
            "basename": "input.txt.idx4",
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "class": "File",
            "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
            "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx4",
            "nameext": ".idx4",
            "nameroot": "input.txt",
            "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx4",
            "size": 0
        },
        {
            "basename": "input.txt.idx5",
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "class": "File",
            "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
            "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx5",
            "nameext": ".idx5",
            "nameroot": "input.txt",
            "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx5",
            "size": 0
        },
        {
            "basename": "input.idx6.txt",
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "class": "File",
            "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
            "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.idx6.txt",
            "nameext": ".txt",
            "nameroot": "input.idx6",
            "path": ".../pytest-0/popen-gw2/unlabled_test5/input.idx6.txt",
            "size": 0
        },
        {
            "basename": "input.txt.idx7",
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "class": "File",
            "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
            "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx7",
            "nameext": ".idx7",
            "nameroot": "input.txt",
            "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx7",
            "size": 0
        },
        {
            "basename": "hello.txt",
            "checksum": "sha1$47a013e660d408619d894b20806b1d5086aab03b",
            "class": "File",
            "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
            "location": "file://.../pytest-0/popen-gw2/unlabled_test5/hello.txt",
            "nameext": ".txt",
            "nameroot": "hello",
            "path": ".../pytest-0/popen-gw2/unlabled_test5/hello.txt",
            "size": 13
        },
        {
            "basename": "input.txt_idx8",
            "class": "Directory",
            "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
            "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt_idx8",
            "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt_idx8"
        }
    ],
    "size": 1111
}
caused by: field 'secondaryFiles' failed comparison: expected: [
    {
        "checksum": "sha1$1f6fe811644355974cdd06d9eb695d6e859f3b44",
        "class": "File",
        "location": "input.txt.idx1",
        "size": 1500
    },
    {
        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
        "class": "File",
        "location": "input.idx2",
        "size": 0
    },
    {
        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
        "class": "File",
        "location": "input.txt.idx3",
        "size": 0
    },
    {
        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
        "class": "File",
        "location": "input.txt.idx4",
        "size": 0
    },
    {
        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
        "class": "File",
        "location": "input.txt.idx5",
        "size": 0
    },
    {
        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
        "class": "File",
        "location": "input.idx6.txt",
        "size": 0
    },
    {
        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
        "class": "File",
        "location": "input.txt.idx7",
        "size": 0
    },
    {
        "checksum": "sha1$47a013e660d408619d894b20806b1d5086aab03b",
        "class": "File",
        "location": "hello.txt",
        "size": 13
    },
    {
        "class": "Directory",
        "listing": [
            {
                "basename": "index",
                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                "class": "File",
                "location": "index",
                "size": 0
            }
        ],
        "location": "input.txt_idx8"
    }
]
got: [
    {
        "basename": "input.txt.idx1",
        "checksum": "sha1$1f6fe811644355974cdd06d9eb695d6e859f3b44",
        "class": "File",
        "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
        "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx1",
        "nameext": ".idx1",
        "nameroot": "input.txt",
        "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx1",
        "size": 1500
    },
    {
        "basename": "input.idx2",
        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
        "class": "File",
        "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
        "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.idx2",
        "nameext": ".idx2",
        "nameroot": "input",
        "path": ".../pytest-0/popen-gw2/unlabled_test5/input.idx2",
        "size": 0
    },
    {
        "basename": "input.txt.idx3",
        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
        "class": "File",
        "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
        "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx3",
        "nameext": ".idx3",
        "nameroot": "input.txt",
        "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx3",
        "size": 0
    },
    {
        "basename": "input.txt.idx4",
        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
        "class": "File",
        "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
        "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx4",
        "nameext": ".idx4",
        "nameroot": "input.txt",
        "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx4",
        "size": 0
    },
    {
        "basename": "input.txt.idx5",
        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
        "class": "File",
        "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
        "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx5",
        "nameext": ".idx5",
        "nameroot": "input.txt",
        "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx5",
        "size": 0
    },
    {
        "basename": "input.idx6.txt",
        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
        "class": "File",
        "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
        "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.idx6.txt",
        "nameext": ".txt",
        "nameroot": "input.idx6",
        "path": ".../pytest-0/popen-gw2/unlabled_test5/input.idx6.txt",
        "size": 0
    },
    {
        "basename": "input.txt.idx7",
        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
        "class": "File",
        "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
        "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx7",
        "nameext": ".idx7",
        "nameroot": "input.txt",
        "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx7",
        "size": 0
    },
    {
        "basename": "hello.txt",
        "checksum": "sha1$47a013e660d408619d894b20806b1d5086aab03b",
        "class": "File",
        "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
        "location": "file://.../pytest-0/popen-gw2/unlabled_test5/hello.txt",
        "nameext": ".txt",
        "nameroot": "hello",
        "path": ".../pytest-0/popen-gw2/unlabled_test5/hello.txt",
        "size": 13
    },
    {
        "basename": "input.txt_idx8",
        "class": "Directory",
        "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
        "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt_idx8",
        "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt_idx8"
    }
]
caused by: expected: {
    "class": "Directory",
    "listing": [
        {
            "basename": "index",
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "class": "File",
            "location": "index",
            "size": 0
        }
    ],
    "location": "input.txt_idx8"
}
got: {
    "basename": "input.txt_idx8",
    "class": "Directory",
    "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
    "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt_idx8",
    "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt_idx8"
}
caused by: 'listing' is mandatory field in Directory object
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/search-job.json
output:
  outfile:
    class: File
    checksum: sha1$e2dc9daaef945ac15f01c238ed2f1660f60909a0
    location: result.txt
    size: 142
  indexedfile:
    location: input.txt
    class: File
    checksum: sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376
    secondaryFiles:
    - location: input.txt.idx1
      class: File
      checksum: sha1$1f6fe811644355974cdd06d9eb695d6e859f3b44
      size: 1500
    - location: input.idx2
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - location: input.txt.idx3
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - location: input.txt.idx4
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - location: input.txt.idx5
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - location: input.idx6.txt
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      class: File
      location: input.txt.idx7
      size: 0
    - checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
      class: File
      location: hello.txt
      size: 13
    - class: Directory
      listing:
      - basename: index
        checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
        class: File
        location: index
        size: 0
      location: input.txt_idx8
    size: 1111
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/search.cwl#main
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#initial_workdir_secondary_files_expr
doc: Test InitialWorkDirRequirement linking input files and capturing 
  secondaryFiles on input and output. Also tests the use of a variety of 
  parameter references and expressions in the secondaryFiles field.
tags:
- initial_work_dir
- inline_javascript
- workflow
line: '512'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::legal_symlink

Flake rate in main: 60.00% (Passed 2 times, Failed 3 times)

Stack Traces | 0.089s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/symlink-legal.cwl
doc: symlink to file inside of working directory should be retrieved
output:
  output_file:
    class: File
    size: 27
    basename: symlink.txt
    checksum: sha1$cd28ec34f3f9425aca544b6332453708e8aaa82a
tags:
- required
- command_line_tool
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#legal_symlink
line: '2874'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::modify_directory_content

Flake rate in main: 60.00% (Passed 2 times, Failed 3 times)

Stack Traces | 1.07s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/inpdir_update_wf.cwl
doc: inplace update has side effect on directory content
tags:
- inplace_update
- workflow
output:
  a:
  - basename: blurb
    class: File
    location: blurb
  b:
  - basename: blurb
    class: File
    location: blurb
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#modify_directory_content
line: '2895'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::outputbinding_glob_directory

Flake rate in main: 60.00% (Passed 2 times, Failed 3 times)

Stack Traces | 1.33s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: doc: Test that OutputBinding.glob accepts Directories
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#outputbinding_glob_directory
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/glob_directory.cwl
output:
  directories:
  - basename: a_dir
    class: Directory
    listing: []
  - basename: b_dir
    class: Directory
    listing: []
  - basename: c_dir
    class: Directory
    listing: []
tags:
- required
- command_line_tool
line: '2917'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::pass_through_required_false_when_nojs

Flake rate in main: 60.00% (Passed 2 times, Failed 3 times)

Stack Traces | 1.27s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/test-index.yaml#pass_through_required_false_when_nojs
doc: "Pass through pattern with pickValue: first_non_null; 'when' is false'; no javascript"
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/cond-wf-003_nojs.cwl
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/test-false.yml
output:
  out1: Direct
tags:
- conditional
- multiple_input
- workflow
line: '214'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::pass_through_required_the_only_non_null

Flake rate in main: 60.00% (Passed 2 times, Failed 3 times)

Stack Traces | 0.258s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/test-index.yaml#pass_through_required_the_only_non_null
doc: 'pickvalue: the_only_non_null will pass, only for false condition'
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/cond-wf-004.cwl
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/val.1.job.yaml
output:
  out1: Direct
tags:
- conditional
- inline_javascript
- multiple_input
- workflow
line: '68'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::pass_through_required_the_only_non_null_nojs

Flake rate in main: 60.00% (Passed 2 times, Failed 3 times)

Stack Traces | 1.86s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/test-index.yaml#pass_through_required_the_only_non_null_nojs
doc: 'pickvalue: the_only_non_null will pass, only for false condition; no javascript'
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/cond-wf-004_nojs.cwl
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/test-false.yml
output:
  out1: Direct
tags:
- conditional
- multiple_input
- workflow
line: '253'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::pass_through_required_true_when_nojs

Flake rate in main: 60.00% (Passed 2 times, Failed 3 times)

Stack Traces | 1.1s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/test-index.yaml#pass_through_required_true_when_nojs
doc: "pass through pattern with pickvalue: first_non_null; 'when' is true'; no javascript"
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/cond-wf-003_nojs.cwl
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/test-true.yml
output:
  out1: foo 23
tags:
- conditional
- multiple_input
- workflow
line: '222'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::scatter_on_scattered_conditional

Flake rate in main: 60.00% (Passed 2 times, Failed 3 times)

Stack Traces | 0.297s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/test-index.yaml#scatter_on_scattered_conditional
doc: 'Simple scatter: Add conditional variable to scatter'
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/cond-wf-010.cwl
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/val.6.list.job.yaml
output:
  out1:
  - foo 4
  - foo 5
  - foo 6
tags:
- conditional
- inline_javascript
- scatter
- workflow
line: '145'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::stage_file_array

Flake rate in main: 60.00% (Passed 2 times, Failed 3 times)

Stack Traces | 0.095s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: doc: Test that array of input files can be staged to directory with entryname
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stage_file_array
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stage_file_array.cwl
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stage_file_array.job.json
output:
  output:
  - basename: sfa-1.txt
    checksum: sha1$4c1cd0638ab3580310823fd1556d27ecb4816df6
    class: File
    size: 49
  - basename: sfa-1.txt.sec
    checksum: sha1$40f4ee1bcd1a9466fcd2e48cf7fc3798025d2f9a
    class: File
    size: 59
  - basename: sfa-2.txt
    checksum: sha1$4c1cd0638ab3580310823fd1556d27ecb4816df6
    class: File
    size: 49
  - basename: sfa-2.txt.sec
    checksum: sha1$40f4ee1bcd1a9466fcd2e48cf7fc3798025d2f9a
    class: File
    size: 59
tags:
- command_line_tool
- initial_work_dir
- inline_javascript
line: '2934'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::stage_file_array_basename

Flake rate in main: 60.00% (Passed 2 times, Failed 3 times)

Stack Traces | 1.61s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: doc: Test that array of input files can be staged to directory with basename
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stage_file_array_basename
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stage_file_array_basename.cwl
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stage_file_array.job.json
output:
  output:
  - basename: sfa-1.txt
    checksum: sha1$4c1cd0638ab3580310823fd1556d27ecb4816df6
    class: File
    size: 49
  - basename: sfa-1.txt.sec
    checksum: sha1$40f4ee1bcd1a9466fcd2e48cf7fc3798025d2f9a
    class: File
    size: 59
  - basename: sfa-2.txt
    checksum: sha1$4c1cd0638ab3580310823fd1556d27ecb4816df6
    class: File
    size: 49
  - basename: sfa-2.txt.sec
    checksum: sha1$40f4ee1bcd1a9466fcd2e48cf7fc3798025d2f9a
    class: File
    size: 59
tags:
- command_line_tool
- initial_work_dir
- inline_javascript
line: '2968'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::storage_float

Flake rate in main: 60.00% (Passed 2 times, Failed 3 times)

Stack Traces | 0.489s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/storage_float.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#storage_float
doc: Test float value for ram/tmpdir/outdir Min(Max) is rounded up
output:
  output:
    location: values.txt
    basename: values.txt
    class: File
    checksum: sha1$c73f68407c144c5336a6c14e7ec79ee470231bd7
    size: 12
tags:
- resource
- command_line_tool
line: '3187'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::the_only_non_null_single_true

Flake rate in main: 60.00% (Passed 2 times, Failed 3 times)

Stack Traces | 1.56s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/test-index.yaml#the_only_non_null_single_true
doc: 'pickValue: the_only_non_null will pass for only one active node'
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/cond-wf-006.cwl
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1..../tests/conditionals/val.1.job.yaml
output:
  out1: bar 1
tags:
- conditional
- inline_javascript
- multiple_input
- workflow
line: '90'

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dependabot bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Feb 25, 2026

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Bump bandit from 1.9.3 to 1.9.4#208

Bump bandit from 1.9.3 to 1.9.4#208
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