Bump pytest-cov from 7.0.0 to 7.1.0 by dependabot[bot] · Pull Request #216 · alpha-unito/streamflow-postgresql

dependabot · 2026-03-23T11:13:28Z

Bumps pytest-cov from 7.0.0 to 7.1.0.

Changelog

7.1.0 (2026-03-21)

Fixed total coverage computation to always be consistent, regardless of reporting settings. Previously some reports could produce different total counts, and consequently can make --cov-fail-under behave different depending on reporting options. See [#641](https://github.com/pytest-dev/pytest-cov/issues/641) <https://github.com/pytest-dev/pytest-cov/issues/641>_.

Improve handling of ResourceWarning from sqlite3.

The plugin adds warning filter for sqlite3 ResourceWarning unclosed database (since 6.2.0). It checks if there is already existing plugin for this message by comparing filter regular expression. When filter is specified on command line the message is escaped and does not match an expected message. A check for an escaped regular expression is added to handle this case.

With this fix one can suppress ResourceWarning from sqlite3 from command line::

pytest -W "ignore:unclosed database in <sqlite3.Connection object at:ResourceWarning" ...

Various improvements to documentation. Contributed by Art Pelling in [#718](https://github.com/pytest-dev/pytest-cov/issues/718) <https://github.com/pytest-dev/pytest-cov/pull/718>_ and "vivodi" in [#738](https://github.com/pytest-dev/pytest-cov/issues/738) <https://github.com/pytest-dev/pytest-cov/pull/738>. Also closed [#736](https://github.com/pytest-dev/pytest-cov/issues/736) <https://github.com/pytest-dev/pytest-cov/issues/736>.

Fixed some assertions in tests. Contributed by in Markéta Machová in [#722](https://github.com/pytest-dev/pytest-cov/issues/722) <https://github.com/pytest-dev/pytest-cov/pull/722>_.

Removed unnecessary coverage configuration copying (meant as a backup because reporting commands had configuration side-effects before coverage 5.0).

Commits

66c8a52 Bump version: 7.0.0 → 7.1.0
f707662 Make the examples use pypy 3.11.
6049a78 Make context test use the old ctracer (seems the new sysmon tracer behaves di...
8ebf20b Update changelog.
861d30e Remove the backup context manager - shouldn't be needed since coverage 5.0, ...
fd4c956 Pass the precision on the nulled total (seems that there's some caching goion...
78c9c4e Only run the 3.9 on older deps.
4849a92 Punctuation.
197c35e Update changelog and hopefully I don't forget to publish release again :))
14dc1c9 Update examples to use 3.11 and make the adhoc layout example look a bit more...
Additional commits viewable in compare view

codecov · 2026-03-23T11:24:08Z

❌ 110 Tests Failed:

Tests completed	Failed	Passed	Skipped
409	110	299	3

View the full list of 111 ❄️ flaky test(s)

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::any_input_param

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.228s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/echo-tool.cwl
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-job.json
output:
  out: "hello test env\n"
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#any_input_param
doc: Test Any type input parameter
tags:
- required
- command_line_tool
line: '409'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::any_outputSource_compatibility

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.318s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/any-type-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/any-type-compat.cwl
output:
  output1:
  - hello
  - world
  output2:
  - foo
  - bar
  output3: hello
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#any_outputSource_compatibility
doc: Testing Any type compatibility in outputSource
tags:
- required
- workflow
line: '195'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::booleanflags_cl_noinputbinding

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.089s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/bool-empty-inputbinding-job.json
output:
  args: []
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/bool-empty-inputbinding.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#booleanflags_cl_noinputbinding
doc: Test that boolean flags do not appear on command line if inputBinding is 
  empty and not null
tags:
- required
- command_line_tool
line: '1708'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::cl_basic_generation

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 22.5s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/bwa-mem-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/bwa-mem-tool.cwl
output:
  args:
  - bwa
  - mem
  - -t
  - '2'
  - -I
  - 1,2,3,4
  - -m
  - '3'
  - chr20.fa
  - example_human_Illumina.pe_1.fastq
  - example_human_Illumina.pe_2.fastq
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#cl_basic_generation
doc: General test of command line generation
tags:
- required
- command_line_tool
line: '4'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::cl_empty_array_input

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.25s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty-array-job.json
output:
  args: []
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty-array-input.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#cl_empty_array_input
doc: Test that empty array input does not add anything to command line
tags:
- required
- command_line_tool
line: '1748'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::cl_gen_arrayofarrays

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.257s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/nested-array-job.yml
output:
  echo:
    checksum: sha1$3f786850e387550fdab836ed7e6dc881de23001b
    location: echo.txt
    class: File
    size: 2
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/nested-array.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#cl_gen_arrayofarrays
doc: Test command line generation of array-of-arrays
tags:
- required
- command_line_tool
line: '1242'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::cl_optional_bindings_provided

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.158s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  args:
  - cat
  - -n
  - hello.txt
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-n-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat1-testcli.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#cl_optional_bindings_provided
doc: Test command line with optional input (provided)
tags:
- required
- command_line_tool
line: '44'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::cl_optional_inputs_missing

Flake rate in main: 75.00% (Passed 1 times, Failed 3 times)

Stack Traces | 0.206s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  args:
  - cat
  - hello.txt
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat1-testcli.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#cl_optional_inputs_missing
doc: Test command line with optional input (missing)
tags:
- required
- command_line_tool
line: '36'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::directory_input_docker

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.067s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir-job.yml
output:
  outlist:
    size: 20
    location: output.txt
    checksum: sha1$13cda8661796ae241da3a18668fb552161a72592
    class: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir2.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#directory_input_docker
doc: Test directory input in Docker
tags:
- required
- command_line_tool
line: '1114'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::directory_input_param_ref

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.324s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir-job.yml
output:
  outlist:
    size: 20
    location: output.txt
    checksum: sha1$13cda8661796ae241da3a18668fb552161a72592
    class: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#directory_input_param_ref
doc: Test directory input with parameter reference
tags:
- required
- command_line_tool
line: '1101'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::directory_output

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.103s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir3-job.yml
output:
  outdir:
    class: Directory
    listing:
    - class: File
      location: goodbye.txt
      checksum: sha1$dd0a4c4c49ba43004d6611771972b6cf969c1c01
      size: 24
    - class: File
      location: hello.txt
      checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
      size: 13
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir3.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#directory_output
doc: Test directory output
tags:
- required
- command_line_tool
line: '1127'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::directory_secondaryfiles

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.301s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir4-job.yml
output:
  outlist:
    checksum: sha1$13cda8661796ae241da3a18668fb552161a72592
    size: 20
    location: output.txt
    class: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir4.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#directory_secondaryfiles
doc: Test directories in secondaryFiles
tags:
- required
- command_line_tool
line: '1151'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::docker_json_output_location

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.375s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  foo:
    location: foo
    class: File
    checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
    size: 4
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/test-cwl-out2.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#docker_json_output_location
doc: Test support for reading cwl.output.json when running in a Docker container
  and just 'location' is provided.
tags:
- shell_command
- command_line_tool
line: '955'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::docker_json_output_path

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 22.7s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  foo:
    location: foo
    class: File
    checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
    size: 4
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/test-cwl-out.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#docker_json_output_path
doc: Test support for reading cwl.output.json when running in a Docker container
  and just 'path' is provided.
tags:
- required
- command_line_tool
line: '939'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::dynamic_initial_workdir

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.365s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir-job.yml
output:
  outlist:
    checksum: sha1$13cda8661796ae241da3a18668fb552161a72592
    size: 20
    location: output.txt
    class: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir5.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#dynamic_initial_workdir
doc: Test dynamic initial work dir
tags:
- initial_work_dir
- command_line_tool
line: '1165'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::dynamic_resreq_inputs

Flake rate in main: 100.00% (Passed 0 times, Failed 1 times)

Stack Traces | 0.239s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dynresreq-job.yaml
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dynresreq.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#dynamic_resreq_inputs
doc: Test dynamic resource reqs referencing inputs
output:
  output:
    location: cores.txt
    size: 2
    class: File
    checksum: sha1$7448d8798a4380162d4b56f9b452e2f6f9e24e7a
tags:
- resource
- command_line_tool
line: '1635'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::dynamic_resreq_wf

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.164s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dynresreq-job.yaml
doc: Test simple workflow with a dynamic resource requirement
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dynresreq-workflow.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#dynamic_resreq_wf
output:
  cores:
    location: output
    size: 2
    class: File
    checksum: sha1$7448d8798a4380162d4b56f9b452e2f6f9e24e7a
tags:
- resource
- workflow
line: '1735'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::env_home_tmpdir

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.103s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output: {}
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/envvar.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#env_home_tmpdir
doc: Test $HOME and $TMPDIR are set correctly
tags:
- required
- command_line_tool
line: '1254'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::env_home_tmpdir_docker

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.25s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output: {}
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/envvar2.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#env_home_tmpdir_docker
doc: Test $HOME and $TMPDIR are set correctly in Docker
tags:
- required
- command_line_tool
line: '1261'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::envvar_req

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.284s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-job.json
output:
  out:
    class: File
    checksum: sha1$b3ec4ed1749c207e52b3a6d08c59f31d83bff519
    location: out
    size: 15
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-tool1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#envvar_req
doc: Test EnvVarRequirement
tags:
- env_var
- command_line_tool
line: '325'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::expr_reference_self_noinput

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.329s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  args: []
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stage-unprovided-file.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expr_reference_self_noinput
doc: Test that expression engine does not fail to evaluate reference to self 
  with unprovided input
tags:
- required
- command_line_tool
line: '1718'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::expression_any

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.202s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression1-tool.cwl
output:
  output: 1
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expression_any
doc: Test default usage of Any in expressions.
tags:
- inline_javascript
- expression_tool
line: '149'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::expression_any_null

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.388s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression1-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression1-tool.cwl
output:
  output: 1
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expression_any_null
doc: Test explicitly passing null to Any type inputs with default values.
tags:
- inline_javascript
- expression_tool
line: '157'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::expression_any_nullstring_nodefaultany

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.612s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression2-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression2-tool.cwl
output:
  output: 2
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expression_any_nullstring_nodefaultany
doc: Testing the string 'null' does not trip up an Any without a default value.
tags:
- inline_javascript
- expression_tool
line: '187'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::expression_any_string

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.13s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression2-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression1-tool.cwl
output:
  output: 2
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expression_any_string
doc: Testing the string 'null' does not trip up an Any with a default value.
tags:
- inline_javascript
- expression_tool
line: '165'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::expression_outputEval

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.558s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc2-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expression_outputEval
doc: Test outputEval to transform output
tags:
- inline_javascript
- command_line_tool
line: '224'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::expression_parseint

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.097s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/parseInt-job.json
output:
  output: 42
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/parseInt-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expression_parseint
doc: Test ExpressionTool with Javascript engine
tags:
- inline_javascript
- expression_tool
line: '217'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::fileliteral_input_docker

Flake rate in main: 100.00% (Passed 0 times, Failed 1 times)

Stack Traces | 0.486s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/file-literal.yml
output:
  output_file:
    class: File
    checksum: sha1$d0e04ff6c413c7d57f9a0ca0a33cd3ab52e2dd9c
    location: output.txt
    size: 18
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat3-nodocker.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#fileliteral_input_docker
doc: Test file literal as input without Docker
tags:
- required
- command_line_tool
line: '1648'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::format_checking

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.183s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/formattest-job.json
output:
  output:
    location: output.txt
    format: http://edamontology.org/format_2330
    size: 1111
    class: File
    checksum: sha1$97fe1b50b4582cebc7d853796ebd62e3e163aa3f
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/formattest.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#format_checking
doc: Test simple format checking.
tags:
- required
- command_line_tool
line: '818'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::format_checking_subclass

Flake rate in main: 100.00% (Passed 0 times, Failed 1 times)

Stack Traces | 16.3s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/formattest2-job.json
output:
  output:
    location: output.txt
    format: http://edamontology.org/format_1929
    size: 12010
    class: File
    checksum: sha1$971d88faeda85a796752ecf752b7e2e34f1337ce
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/formattest2.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#format_checking_subclass
doc: Test format checking against ontology using subclassOf.
tags:
- required
- command_line_tool
line: '832'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::hints_unknown_ignored

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.782s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
output:
  output_file:
    class: File
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    location: output.txt
    size: 13
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat5-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#hints_unknown_ignored
doc: Test unknown hints are ignored.
tags:
- required
- command_line_tool
line: '500'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::initial_workdir_empty_writable

Flake rate in main: 100.00% (Passed 0 times, Failed 1 times)

Stack Traces | 0.327s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  out:
    basename: emptyWritableDir
    listing:
    - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      basename: blurg
      location: blurg
      class: File
      size: 0
    location: emptyWritableDir
    class: Directory
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/writable-dir.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#initial_workdir_empty_writable
doc: Test empty writable dir with InitialWorkDirRequirement
tags:
- inline_javascript
- initial_work_dir
- command_line_tool
line: '1593'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::initial_workdir_empty_writable_docker

Flake rate in main: 100.00% (Passed 0 times, Failed 1 times)

Stack Traces | 0.121s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  out:
    basename: emptyWritableDir
    listing:
    - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      basename: blurg
      location: blurg
      class: File
      size: 0
    location: emptyWritableDir
    class: Directory
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/writable-dir-docker.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#initial_workdir_empty_writable_docker
doc: Test empty writable dir with InitialWorkDirRequirement inside Docker
tags:
- inline_javascript
- initial_work_dir
- command_line_tool
line: '1614'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::initial_workdir_expr

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.308s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/arguments-job.yml
output:
  classfile:
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: Hello.class
    class: File
    size: 0
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/linkfile.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#initial_workdir_expr
doc: Test expression in InitialWorkDir listing
tags:
- initial_work_dir
- command_line_tool
line: '1205'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::initial_workdir_secondary_files_expr

Flake rate in main: 18.18% (Passed 18 times, Failed 4 times)

Stack Traces | 0.567s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/search-job.json
output:
  outfile:
    class: File
    checksum: sha1$e2dc9daaef945ac15f01c238ed2f1660f60909a0
    location: result.txt
    size: 142
  indexedfile:
    location: input.txt
    class: File
    checksum: sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376
    secondaryFiles:
    - location: input.txt.idx1
      class: File
      checksum: sha1$1f6fe811644355974cdd06d9eb695d6e859f3b44
      size: 1500
    - location: input.idx2
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - location: input.txt.idx3
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - location: input.txt.idx4
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - location: input.txt.idx5
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - location: input.idx6.txt
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      class: File
      location: input.txt.idx7
      size: 0
    - checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
      class: File
      location: hello.txt
      size: 13
    - class: Directory
      listing:
      - basename: index
        checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
        class: File
        location: index
        size: 0
      location: input.txt_idx8
    size: 1111
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/search.cwl#main
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#initial_workdir_secondary_files_expr
doc: Test InitialWorkDirRequirement linking input files and capturing 
  secondaryFiles on input and output. Also tests the use of a variety of 
  parameter references and expressions in the secondaryFiles field.
tags:
- initial_work_dir
- inline_javascript
- workflow
line: '512'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::initial_workdir_trailingnl

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.191s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/string-job.json
output:
  out:
    class: File
    checksum: sha1$6a47aa22b2a9d13a66a24b3ee5eaed95ce4753cf
    location: example.conf
    size: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/iwdr-entry.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#initial_workdir_trailingnl
doc: Test if trailing newline is present in file entry in InitialWorkDir
tags:
- initial_work_dir
- command_line_tool
line: '607'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::initialworkdir_nesteddir

Flake rate in main: 100.00% (Passed 0 times, Failed 1 times)

Stack Traces | 0.348s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: doc: Test InitialWorkDirRequirement with a nested directory structure from 
  another step
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  ya_empty:
    class: File
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: ya
    size: 0
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/iwdr_with_nested_dirs.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#initialworkdir_nesteddir
tags:
- initial_work_dir
- workflow
line: '1696'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::initworkdir_expreng_requirements

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.271s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  foo:
    checksum: sha1$63da67422622fbf9251a046d7a34b7ea0fd4fead
    class: File
    location: foo.txt
    size: 22
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/template-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#initworkdir_expreng_requirements
doc: Test InitialWorkDirRequirement ExpressionEngineRequirement.engineConfig 
  feature
tags:
- initial_work_dir
- inline_javascript
- command_line_tool
line: '52'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::inline_expressions

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.075s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc4-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#inline_expressions
doc: Test inline expressions
tags:
- inline_javascript
- command_line_tool
line: '619'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::input_dir_inputbinding

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.198s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir-job.yml
output:
  outlist:
    size: 20
    location: output.txt
    checksum: sha1$13cda8661796ae241da3a18668fb552161a72592
    class: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir6.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#input_dir_inputbinding
doc: Test directory input with inputBinding
tags:
- shell_command
- command_line_tool
line: '1229'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::input_file_literal

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.182s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/file-literal.yml
output:
  output_file:
    class: File
    checksum: sha1$d0e04ff6c413c7d57f9a0ca0a33cd3ab52e2dd9c
    location: output.txt
    size: 18
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat3-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#input_file_literal
doc: Test file literal as input
tags:
- required
- command_line_tool
line: '1193'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::json_output_location_relative

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.095s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  foo:
    location: foo
    class: File
    checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
    size: 4
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/test-cwl-out4.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#json_output_location_relative
doc: Test support for reading cwl.output.json where 'location' is relative 
  reference to output dir.
tags:
- required
- command_line_tool
line: '986'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::json_output_path_relative

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.326s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  foo:
    location: foo
    class: File
    checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
    size: 4
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/test-cwl-out3.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#json_output_path_relative
doc: Test support for reading cwl.output.json where 'path' is relative path in 
  output dir.
tags:
- required
- command_line_tool
line: '971'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::metadata

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 1.14s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: output: {}
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/metadata.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#metadata
doc: Test metadata
tags:
- required
- command_line_tool
line: '811'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::multiple_glob_expr_list

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.326s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/abc.json
output:
  files:
  - location: a
    size: 0
    class: File
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
  - location: b
    size: 0
    class: File
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
  - location: c
    size: 0
    class: File
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/glob-expr-list.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#multiple_glob_expr_list
doc: Test support for returning multiple glob patterns from expression
tags:
- required
- command_line_tool
line: '1001'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::nameroot_nameext_stdout_expr

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.325s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  b:
    checksum: sha1$c4cfd130e7578714e3eef91c1d6d90e0e0b9db3e
    location: whale.xtx
    class: File
    size: 21
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/nameroot.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#nameroot_nameext_stdout_expr
doc: Test nameroot/nameext expression in arguments, stdout
tags:
- required
- command_line_tool
line: '1217'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::nested_cl_bindings

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.32s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  args:
  - tmap
  - mapall
  - stage1
  - map1
  - --min-seq-length
  - '20'
  - map2
  - --min-seq-length
  - '20'
  - stage2
  - map1
  - --max-seq-length
  - '20'
  - --min-seq-length
  - '10'
  - --seed-length
  - '16'
  - map2
  - --max-seed-hits
  - '-1'
  - --max-seq-length
  - '20'
  - --min-seq-length
  - '10'
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/tmap-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/tmap-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#nested_cl_bindings
doc: Test nested command line bindings
tags:
- schema_def
- command_line_tool
line: '26'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::nested_prefixes_arrays

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.424s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  args:
  - bwa
  - mem
  - chr20.fa
  - -XXX
  - -YYY
  - example_human_Illumina.pe_1.fastq
  - -YYY
  - example_human_Illumina.pe_2.fastq
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/bwa-mem-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/binding-test.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#nested_prefixes_arrays
doc: Test nested prefixes with arrays
tags:
- required
- command_line_tool
line: '15'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::nested_workflow

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.292s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines8-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#nested_workflow
doc: Test nested workflow
tags:
- subworkflow
- workflow
- inline_javascript
line: '417'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::outputbinding_glob_sorted

Flake rate in main: 100.00% (Passed 0 times, Failed 1 times)

Stack Traces | 0.247s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: doc: Test that OutputBinding.glob is sorted as specified by POSIX
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#outputbinding_glob_sorted
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/glob_test.cwl
output:
  letters:
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: a
    class: File
    size: 0
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: b
    class: File
    size: 0
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: c
    class: File
    size: 0
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: w
    class: File
    size: 0
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: x
    class: File
    size: 0
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: y
    class: File
    size: 0
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: z
    class: File
    size: 0
tags:
- required
- command_line_tool
line: '1660'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::param_evaluation_expr

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.486s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  t1:
    bar:
      b az: 2
      b"az:
      b'az: 1
      baz: zab1
      buz:
      - a
      - b
      - c
  t10: 1
  t11: 1
  t12:
  t13: -zab1
  t14: -zab1
  t15: -zab1
  t16: -zab1
  t17: zab1 zab1
  t18: zab1 zab1
  t19: zab1 zab1
  t2:
    b az: 2
    b"az:
    b'az: 1
    baz: zab1
    buz:
    - a
    - b
    - c
  t20: zab1 zab1
  t21: 2 2
  t22: true true
  t23: true true
  t24: null null
  t25: b
  t26: b b
  t3:
    b az: 2
    b"az:
    b'az: 1
    baz: zab1
    buz:
    - a
    - b
    - c
  t4:
    b az: 2
    b"az:
    b'az: 1
    baz: zab1
    buz:
    - a
    - b
    - c
  t5: zab1
  t6: zab1
  t7: zab1
  t8: zab1
  t9: 2
  t27:
  t28: 3
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/params2.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#param_evaluation_expr
doc: Test parameter evaluation, with support for JS expressions
tags:
- inline_javascript
- command_line_tool
line: '732'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::param_evaluation_noexpr

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.226s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  t1:
    bar:
      b az: 2
      b"az:
      b'az: 1
      baz: zab1
      buz:
      - a
      - b
      - c
  t10: 1
  t11: 1
  t12:
  t13: -zab1
  t14: -zab1
  t15: -zab1
  t16: -zab1
  t17: zab1 zab1
  t18: zab1 zab1
  t19: zab1 zab1
  t2:
    b az: 2
    b"az:
    b'az: 1
    baz: zab1
    buz:
    - a
    - b
    - c
  t20: zab1 zab1
  t21: 2 2
  t22: true true
  t23: true true
  t24: null null
  t25: b
  t26: b b
  t3:
    b az: 2
    b"az:
    b'az: 1
    baz: zab1
    buz:
    - a
    - b
    - c
  t4:
    b az: 2
    b"az:
    b'az: 1
    baz: zab1
    buz:
    - a
    - b
    - c
  t5: zab1
  t6: zab1
  t7: zab1
  t8: zab1
  t9: 2
  t27:
  t28: 3
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/params.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#param_evaluation_noexpr
doc: Test parameter evaluation, no support for JS expressions
tags:
- required
- command_line_tool
line: '654'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::rename

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.219s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/rename-job.json
output:
  outfile:
    class: File
    checksum: sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376
    location: fish.txt
    size: 1111
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/rename.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#rename
doc: Test InitialWorkDirRequirement with expression in filename.
tags:
- initial_work_dir
- command_line_tool
line: '594'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::requirement_override_hints

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.251s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-job.json
output:
  out:
    class: File
    checksum: sha1$cdc1e84968261d6a7575b5305945471f8be199b6
    location: out
    size: 9
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-wf2.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#requirement_override_hints
doc: Test requirements override hints
tags:
- env_var
- workflow
line: '436'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::requirement_priority

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.338s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-job.json
output:
  out:
    class: File
    checksum: sha1$b3ec4ed1749c207e52b3a6d08c59f31d83bff519
    location: out
    size: 15
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-wf1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#requirement_priority
doc: Test requirement priority
tags:
- env_var
- workflow
line: '424'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::requirement_workflow_steps

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.26s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-job.json
output:
  out:
    class: File
    checksum: sha1$cdc1e84968261d6a7575b5305945471f8be199b6
    location: out
    size: 9
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-wf3.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#requirement_workflow_steps
doc: Test requirements on workflow steps
tags:
- env_var
- workflow
line: '448'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::resreq_step_overrides_wf

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.127s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/steplevel-resreq.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#resreq_step_overrides_wf
doc: Test that ResourceRequirement on a step level redefines requirement on the 
  workflow level
output:
  out:
    location: cores.txt
    size: 2
    class: File
    checksum: sha1$e5fa44f2b31c1fb553b6021e7360d07d5d91ff5e
tags:
- resource
- workflow
line: '1757'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::schemadef_req_tool_param

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.448s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/schemadef-job.json
output:
  output:
    location: output.txt
    size: 12
    class: File
    checksum: sha1$f12e6cfe70f3253f70b0dbde17c692e7fb0f1e5e
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/schemadef-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#schemadef_req_tool_param
doc: Test SchemaDefRequirement definition used in tool parameter
tags:
- schema_def
- command_line_tool
line: '628'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::schemadef_req_wf_param

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.271s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/schemadef-job.json
output:
  output:
    location: output.txt
    size: 12
    class: File
    checksum: sha1$f12e6cfe70f3253f70b0dbde17c692e7fb0f1e5e
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/schemadef-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#schemadef_req_wf_param
doc: Test SchemaDefRequirement definition used in workflow parameter
tags:
- schema_def
- workflow
line: '641'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::stderr_redirect

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.28s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stderr.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stderr_redirect
doc: Test command line with stderr redirection
output:
  output_file:
    class: File
    checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
    size: 4
    location: error.txt
tags:
- required
- command_line_tool
line: '101'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::stderr_redirect_mediumcut

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.194s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  output_file:
    class: File
    size: 4
    checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
    location: std.err
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stderr-mediumcut.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stderr_redirect_mediumcut
doc: Test command line with stderr redirection, named brief syntax
tags:
- required
- command_line_tool
line: '125'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::stderr_redirect_shortcut

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.219s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stderr-shortcut.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stderr_redirect_shortcut
doc: Test command line with stderr redirection, brief syntax
output:
  output_file:
    class: File
    checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
    size: 4
    location: Any
tags:
- required
- command_line_tool
line: '113'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::stdinout_redirect

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.081s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
output:
  output:
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    class: File
    location: output
    size: 13
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stdinout_redirect
doc: Test command execution in with stdin and stdout redirection
tags:
- required
- command_line_tool
line: '205'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::stdinout_redirect_docker

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.081s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
output:
  output_txt:
    class: File
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    location: output.txt
    size: 13
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat4-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stdinout_redirect_docker
doc: Test command execution in Docker with stdin and stdout redirection
tags:
- required
- command_line_tool
line: '137'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::stdout_redirect_docker

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.109s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
output:
  output_file:
    class: File
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    location: output.txt
    size: 13
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat3-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stdout_redirect_docker
doc: Test command execution in Docker with stdout redirection
tags:
- docker
- command_line_tool
line: '65'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::stdout_redirect_mediumcut_docker

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.378s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
output:
  output_file:
    class: File
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    location: cat-out
    size: 13
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat3-tool-mediumcut.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stdout_redirect_mediumcut_docker
doc: Test command execution in Docker with mediumcut stdout redirection
tags:
- docker
- command_line_tool
line: '89'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::stdout_redirect_shortcut_docker

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.21s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat3-tool-shortcut.cwl
output:
  output_file:
    class: File
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    location: Any
    size: 13
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stdout_redirect_shortcut_docker
doc: Test command execution in Docker with shortcut stdout redirection
tags:
- docker
- command_line_tool
line: '77'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::step_input_default_value

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.312s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines9-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#step_input_default_value
doc: Test default value on step input parameter
tags:
- inline_javascript
- workflow
line: '460'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::step_input_default_value_nosource

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 22.7s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines11-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#step_input_default_value_nosource
doc: Test use default value on step input parameter with empty source
tags:
- inline_javascript
- workflow
line: '467'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::step_input_default_value_nullsource

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.173s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/file1-null.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines11-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#step_input_default_value_nullsource
doc: Test use default value on step input parameter with null source
tags:
- inline_javascript
- workflow
line: '474'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::step_input_default_value_overriden

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.345s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
output:
  count_output: 1
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines11-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#step_input_default_value_overriden
doc: Test default value on step input parameter overridden by provided source
tags:
- inline_javascript
- workflow
line: '481'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::success_codes

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.433s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/exit-success.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#success_codes
doc: Test successCodes
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output: {}
tags:
- required
- command_line_tool
line: '1728'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::valuefrom_constant_overrides_inputs

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.221s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/array-of-strings-job.yml
output:
  args:
  - replacementValue
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/valueFrom-constant.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#valuefrom_constant_overrides_inputs
doc: Test valueFrom with constant value overriding provided array inputs
tags:
- required
- command_line_tool
line: '1770'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_default_tool_default

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.27s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  default_output: workflow_default
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/echo-wf-default.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_default_tool_default
doc: Test that workflow defaults override tool defaults
tags:
- required
- workflow
line: '318'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_input_default_missing

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.395s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  count_output: 1
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines5-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_input_default_missing
doc: Test workflow with default value for input parameter (missing)
tags:
- inline_javascript
- workflow
line: '304'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_input_default_provided

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.164s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines5-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_input_default_provided
doc: Test workflow with default value for input parameter (provided)
tags:
- inline_javascript
- workflow
line: '311'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_dotproduct_twoempty

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.351s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-empty-job4.json
output:
  out: []
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf4.cwl#main
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_dotproduct_twoempty
doc: Test workflow scatter with two empty scatter parameters and dotproduct join
  method
tags:
- scatter
- workflow
line: '401'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_emptylist

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.517s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-empty-job1.json
output:
  out: []
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_emptylist
doc: Test workflow scatter with single empty list parameter
tags:
- scatter
- workflow
line: '369'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_flat_crossproduct_oneempty

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.568s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-empty-job2.json
output:
  out: []
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf3.cwl#main
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_flat_crossproduct_oneempty
doc: Test workflow scatter with two scatter parameters, one of which is empty 
  and flat_crossproduct join method
tags:
- scatter
- workflow
line: '393'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_nested_crossproduct_firstempty

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.471s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-empty-job3.json
output:
  out: []
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf3.cwl#main
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_nested_crossproduct_firstempty
doc: Test workflow scatter with two scatter parameters and nested_crossproduct 
  join method with first list empty
tags:
- scatter
- workflow
line: '385'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_nested_crossproduct_secondempty

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.114s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-empty-job2.json
output:
  out:
  - []
  - []
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf2.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_nested_crossproduct_secondempty
doc: Test workflow scatter with two scatter parameters and nested_crossproduct 
  join method with second list empty
tags:
- scatter
- workflow
line: '377'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_oneparam_valueFrom

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.29s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-job3.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-wf6.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_oneparam_valueFrom
doc: Test valueFrom eval on scattered input parameter
output:
  out_message:
  - checksum: sha1$98030575f6fc40e5021be5a8803a6bef94aee11f
    location: Any
    class: File
    size: 16
  - checksum: sha1$edcacd50778d98ae113015406b3195c165059dd8
    location: Any
    class: File
    size: 16
tags:
- scatter
- step_input
- workflow
line: '1066'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_oneparam_valuefrom

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.141s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-job1.json
output:
  out:
  - foo one one
  - foo one two
  - foo one three
  - foo one four
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-wf1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_oneparam_valuefrom
doc: Test workflow scatter with single scatter parameter and two valueFrom on 
  step input (first and current el)
tags:
- scatter
- step_input
- workflow
line: '1026'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_oneparam_valuefrom_twice_current_el

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.457s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-job1.json
output:
  out:
  - foo one one
  - foo two two
  - foo three three
  - foo four four
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-wf5.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_oneparam_valuefrom_twice_current_el
doc: Test workflow scatter with single scatter parameter and two valueFrom on 
  step input (current el twice)
tags:
- scatter
- step_input
- workflow
line: '1058'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_single_param

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.252s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-job1.json
output:
  out:
  - foo one
  - foo two
  - foo three
  - foo four
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_single_param
doc: Test workflow scatter with single scatter parameter
tags:
- scatter
- workflow
line: '337'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_two_dotproduct

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.323s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-job2.json
output:
  out:
  - foo one three
  - foo two four
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf4.cwl#main
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_two_dotproduct
doc: Test workflow scatter with two scatter parameters and dotproduct join 
  method
tags:
- scatter
- workflow
line: '361'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_two_flat_crossproduct

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.365s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-job2.json
output:
  out:
  - foo one three
  - foo one four
  - foo two three
  - foo two four
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf3.cwl#main
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_two_flat_crossproduct
doc: Test workflow scatter with two scatter parameters and flat_crossproduct 
  join method
tags:
- scatter
- workflow
line: '353'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_two_nested_crossproduct

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.097s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-job2.json
output:
  out:
  - - foo one three
    - foo one four
  - - foo two three
    - foo two four
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf2.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_two_nested_crossproduct
doc: Test workflow scatter with two scatter parameters and nested_crossproduct 
  join method
tags:
- scatter
- workflow
line: '345'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_twoparam_dotproduct_valuefrom

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.404s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-job2.json
output:
  out:
  - foo one one three
  - foo one two four
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-wf4.cwl#main
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_twoparam_dotproduct_valuefrom
doc: Test workflow scatter with two scatter parameters and dotproduct join 
  method and valueFrom on step input
tags:
- scatter
- step_input
- workflow
line: '1050'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_twoparam_flat_crossproduct_valuefrom

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.366s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-job2.json
output:
  out:
  - foo one one three
  - foo one one four
  - foo one two three
  - foo one two four
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-wf3.cwl#main
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_twoparam_flat_crossproduct_valuefrom
doc: Test workflow scatter with two scatter parameters and flat_crossproduct 
  join method and valueFrom on step input
tags:
- scatter
- step_input
- workflow
line: '1042'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_twoparam_nested_crossproduct_valuefrom

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.59s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-job2.json
output:
  out:
  - - foo one one three
    - foo one one four
  - - foo one two three
    - foo one two four
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-wf2.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_twoparam_nested_crossproduct_valuefrom
doc: Test workflow scatter with two scatter parameters and nested_crossproduct 
  join method and valueFrom on step input
tags:
- scatter
- step_input
- workflow
line: '1034'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_simple

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.272s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/revsort-job.json
output:
  output:
    class: File
    checksum: sha1$b9214658cc453331b62c2282b772a5c063dbd284
    location: output.txt
    size: 1111
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/revsort.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_simple
doc: Test simple workflow
tags:
- required
- workflow
line: '488'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_two_inputfiles_namecollision

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.8s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/conflict-job.json
output:
  fileout:
    location: out.txt
    checksum: sha1$a2d8d6e7b28295dc9977dc3bdb652ddd480995f0
    class: File
    size: 25
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/conflict-wf.cwl#collision
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_two_inputfiles_namecollision
doc: Test workflow two input files with same name.
tags:
- required
- workflow
line: '1087'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_wc_expressiontool

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.323s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines2-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_wc_expressiontool
doc: Test two step workflow with inline tools
tags:
- inline_javascript
- workflow
line: '238'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_wc_nomultiple

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.272s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines4-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines13-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_wc_nomultiple
doc: Test when step source is a single-item list and there is no linkMerge, then
  it not wrapped in a list, and that MultipleInputFeatureRequirement is not 
  required.
tags:
- inline_javascript
- workflow
line: '283'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_wc_nomultiple_merge_nested

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.207s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines4-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines19-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_wc_nomultiple_merge_nested
doc: Test when step source is a single-item list and linkMerge is listed, then 
  it is wrapped in a list.
tags:
- inline_javascript
- workflow
line: '294'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_wc_parseInt

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.17s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines1-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_wc_parseInt
doc: Test two step workflow with imported tools
tags:
- inline_javascript
- workflow
line: '231'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_wc_scatter

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 22.7s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines3-job.json
output:
  count_output:
  - 16
  - 1
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines3-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_wc_scatter
doc: Test single step workflow with Scatter step
tags:
- scatter
- inline_javascript
- workflow
line: '245'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_wc_scatter_multiple_flattened

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.178s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines6-job.json
output:
  count_output: 34
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines7-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_wc_scatter_multiple_flattened
doc: Test single step workflow with Scatter step and two data links connected to
  same input, flattened merge behavior
tags:
- multiple_input
- inline_javascript
- workflow
line: '273'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_wc_scatter_multiple_merge

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.331s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines4-job.json
output:
  count_output:
  - 16
  - 1
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines4-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_wc_scatter_multiple_merge
doc: Test single step workflow with Scatter step and two data links connected to
  same input, default merge behavior
tags:
- scatter
- multiple_input
- inline_javascript
- workflow
line: '253'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_wc_scatter_multiple_nested

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.371s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines6-job.json
output:
  count_output:
  - 32
  - 2
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines6-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_wc_scatter_multiple_nested
doc: Test single step workflow with Scatter step and two data links connected to
  same input, nested merge behavior
tags:
- scatter
- multiple_input
- inline_javascript
- workflow
line: '263'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_any_input_with_file_provided

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.248s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-file.json
output:
  t1: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-wf-1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_any_input_with_file_provided
doc: Test Any parameter with file input to a workflow
tags:
- workflow
- inline_javascript
line: '2135'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_any_input_with_integer_provided

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.352s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-int.json
output:
  t1: 7
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-wf-1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_any_input_with_integer_provided
doc: Test Any parameter with integer input to a workflow
tags:
- workflow
- inline_javascript
line: '2121'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_any_input_with_mixed_array_provided

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.285s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-array.json
output:
  t1:
  - 1
  - moocow
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-wf-1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_any_input_with_mixed_array_provided
doc: Test Any parameter with array input to a workflow
tags:
- workflow
- inline_javascript
line: '2142'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_any_input_with_record_provided

Flake rate in main: 100.00% (Passed 0 times, Failed 1 times)

Stack Traces | 0.086s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-record.json
output:
  t1:
    moo: 1
    cow: 5
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-wf-1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_any_input_with_record_provided
doc: Test Any parameter with record input to a tool
tags:
- workflow
- inline_javascript
line: '2149'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_any_input_with_string_provided

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.413s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-string.json
output:
  t1: '7'
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-wf-1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_any_input_with_string_provided
doc: Test Any parameter with string input to a workflow
tags:
- workflow
- inline_javascript
line: '2128'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_embedded_subworkflow_embedded_subsubworkflow

Flake rate in main: 100.00% (Passed 0 times, Failed 1 times)

Stack Traces | 0.787s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines15-wf.cwl
doc: Test twice nested subworkflow
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_embedded_subworkflow_embedded_subsubworkflow
tags:
- workflow
- subworkflow
- inline_javascript
line: '1911'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_embedded_subworkflow_with_subsubworkflow_and_tool

Flake rate in main: 100.00% (Passed 0 times, Failed 1 times)

Stack Traces | 0.349s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines17-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_embedded_subworkflow_with_subsubworkflow_and_tool
doc: Test subworkflow of mixed depth with tool after
tags:
- workflow
- subworkflow
- inline_javascript
line: '1925'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_embedded_subworkflow_with_tool_and_subsubworkflow

Flake rate in main: 100.00% (Passed 0 times, Failed 1 times)

Stack Traces | 0.276s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines16-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_embedded_subworkflow_with_tool_and_subsubworkflow
doc: Test subworkflow of mixed depth with tool first
tags:
- workflow
- subworkflow
- inline_javascript
line: '1918'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_union_default_input_unspecified

Flake rate in main: 100.00% (Passed 0 times, Failed 1 times)

Stack Traces | 4.12s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  o: the default value
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-union-input-default-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_union_default_input_unspecified
doc: Test union type input to workflow with default unspecified
tags:
- workflow
- inline_javascript
- expression_tool
line: '2156'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::writable_stagedfiles

Flake rate in main: 66.67% (Passed 1 times, Failed 2 times)

Stack Traces | 0.258s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stagefile-job.yml
output:
  outfile:
    checksum: sha1$b769c7b2e316edd4b5eb2d24799b2c1f9d8c86e6
    size: 1111
    location: bob.txt
    class: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stagefile.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#writable_stagedfiles
doc: Test writable staged files.
tags:
- initial_work_dir
- command_line_tool
line: '1179'

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Bumps [pytest-cov](https://github.com/pytest-dev/pytest-cov) from 7.0.0 to 7.1.0. - [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst) - [Commits](pytest-dev/pytest-cov@v7.0.0...v7.1.0) --- updated-dependencies: - dependency-name: pytest-cov dependency-version: 7.1.0 dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com>

dependabot bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Mar 23, 2026

dependabot bot force-pushed the dependabot/uv/pytest-cov-7.1.0 branch from 3a0187b to be1da0c Compare April 11, 2026 19:48

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Bump pytest-cov from 7.0.0 to 7.1.0#216

Bump pytest-cov from 7.0.0 to 7.1.0#216
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dependabot/uv/pytest-cov-7.1.0

dependabot bot commented on behalf of github Mar 23, 2026 •

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7.1.0 (2026-03-21)

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dependabot bot commented on behalf of github Mar 23, 2026 •

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