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@pascalwhoop pascalwhoop commented Jan 16, 2026

Adds comprehensive MCP server with 84 tools across 14 databases:

  • Unified endpoint for all databases (single connection)
  • Individual endpoints for each API
  • No authentication required (except OMIM with user API keys)

These databases are accessible through the Tool Universe (with some exceptions) but the benefit of this adapter is that it's fully accessible via web / doesn't require python runtime on desktop):

  • Reactome (pathways)
  • KEGG (pathways/diseases)
  • UniProt (proteins)
  • GWAS Catalog (genetic associations)
  • OpenFDA (drug safety)
  • Pathway Commons
  • Gene Ontology
  • OMIM (genetic disorders)
  • NCI Thesaurus (cancer)

Also includes ChEMBL, PubMed, ClinicalTrials.gov, and OpenTargets through both unified and individual endpoints.

Backend

the system is GCP Cloud Run based, so it auto scales and simply proxies & translates all those APIs.
https://github.com/pascalwhoop/medical-mcps

Been running smoothly for a while now
image

Adds comprehensive MCP server with 84 tools across 14 databases:
- Unified endpoint for all databases (single connection)
- Individual endpoints for each API
- RFC 9111 HTTP caching with 30-day TTL
- No authentication required (except OMIM with user API keys)

Unique databases not in marketplace:
- Reactome (pathways)
- KEGG (pathways/diseases)
- UniProt (proteins)
- GWAS Catalog (genetic associations)
- OpenFDA (drug safety)
- Pathway Commons
- Gene Ontology
- OMIM (genetic disorders)
- NCI Thesaurus (cancer)
- CTG (gene-disease)

Also includes ChEMBL, PubMed, ClinicalTrials.gov, and OpenTargets
through both unified and individual endpoints.
@pascalwhoop pascalwhoop marked this pull request as ready for review January 20, 2026 09:23
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