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Pull requests: arq5x/bedtools2

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Pull requests list

python is python3 on most modern unix platforms
#1134 opened Nov 30, 2025 by mp15 Loading…
Adding badges to usegalaxy.org and usegalaxy.eu
#1130 opened Oct 14, 2025 by nekrut Loading…
typo sammary->summary
#1128 opened Jul 31, 2025 by lindenb Loading…
add circular genome support to bedtools getfasta
#1127 opened Jul 9, 2025 by brenodupin Loading…
Add set operations for BEDPE intersect and subtract (set difference)
#1115 opened Jan 29, 2025 by mp15 • Draft
Support native builds on Windows with MinGW/UCRT
#1104 opened Sep 4, 2024 by theAeon Loading…
Update ParseTools.h
#1097 opened Jul 19, 2024 by emyr666 Loading…
adding a revcomp tool
#1095 opened Jun 14, 2024 by kloetzl Loading…
fix memory leak in shiftBed
#1094 opened Jun 14, 2024 by kloetzl Loading…
Correct link to Bedtools tutorial in the docs
#1093 opened Jun 7, 2024 by dtdoering Loading…
allow python from environment and missing includes on musl
#1087 opened Apr 25, 2024 by SoapGentoo Loading…
3
Fix minor shuffleBed option typo
#1074 opened Jan 4, 2024 by ryancey1 Loading…
1
describe bed coordinates as zero-based half-open intervals
#1070 opened Nov 7, 2023 by kloetzl Loading…
1
Minor typo fix in help
#1064 opened Sep 7, 2023 by nikhil Loading…
workaround for issue arq5x#1049
#1052 opened May 20, 2023 by hkawaji Loading…
Fix for Issue #1023
#1026 opened Nov 14, 2022 by JoeVieira Loading…
1
1
Add makewindows initial window/step feature
#936 opened Aug 7, 2021 by hisakatha Loading…
Fix an unexpected warning from makewindows
#933 opened Aug 6, 2021 by hisakatha Loading…
fix parsing headers 48105b07
#924 opened Jun 23, 2021 by kuk0 Loading…
4
Building on Windows using MSYS2
#906 opened Mar 19, 2021 by mkviatkovskii Loading…
4
Minor patches for easier porting and packaging
#895 opened Jan 24, 2021 by outpaddling Loading…
7
Fix issue #832
#847 opened Jun 5, 2020 by 38 Loading…
1
added 2 options -tn5 and -ext
#685 opened Feb 13, 2019 by lldelisle Loading…
1
Changing default behavior of BedAnnotate to preserving input lines order
#644 opened Jul 11, 2018 by borisevichdi Loading…
Mark the STL set compare operators as const.
#636 opened May 22, 2018 by yasushi-saito Loading…
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