LocaTR identification pipeline for annotating LTR retrotransposons in any assembled genome.
Mason AS, Fulton JE, Hocking PM & Burt DW (2016), A new look at the LTR retrotransposon content of the chicken genome, BMC Genomics, 17:688.
Moved repo from old github account (andrewstephenmason) to here (asmasonomics)
Noticed the Dfam folder (401) was too large for GitHub upload. Am now hosting on my Google Drive as an intact tarball. When you download this, remove the existing 401 directory, then access the directory with this command:
tar -zxvf 401_Dfam_nucl_pHMMs.tar.gz
File available at :- http://tinyurl.com/h2mjys2