Performance and Correctness Improvements#9
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H2CO3 wants to merge 2 commits intobayesiancook:masterfrom
Open
Performance and Correctness Improvements#9H2CO3 wants to merge 2 commits intobayesiancook:masterfrom
H2CO3 wants to merge 2 commits intobayesiancook:masterfrom
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There is a potentially large (O(data size)) stack allocation in
BPCompare(), which causedbpcompto crash when run on a bigger data set and number of cycles (~500 proteins, 20 000 cycles). This has been mitigated by modifying the function so that is usesstd::vectorfor heap allocation in place of VLAs on the stack (which aren't portable/standard C++ anyway).The Makefile has also been modified so that the compiler and the linker receives the
-fltoflag. Most modern C++ compilers support this flag, and it demonstrably improves the performance of the emitted code.