fix shared drive files paths and descriptions

docs/BBGProtocols/BBGlab_new_protocol.md

@@ -4,46 +4,49 @@
 
 ## Create project folders in the cluster
 
-Check the cluster structure organization
-[here](https://bbglab.github.io/bbgwiki/Cluster_basics/Structure/#description).
-You can create the corresponding project folders within main directories:
+Check the cluster structure organization [here](https://bbglab.github.io/bbgwiki/Cluster_basics/Structure/#description).
+You can create the corresponding project folders within these main directories:
 
 - Create **project folder** in `/data/bbg/projects/`.
 This folder should contain all the files related to the analysis of your project
 (jupyter notebooks, scripts, processed files, etc.)
 - Create **dataset folder** in `/data/bbg/datasets/` or `/data/bbg/datasafe/` or s3.
 This folder should contain all the original data (or mildly processed data) of your project
 (fastq files, bam files, vcf files, maf files, etc.).
+
+To create these folders in the cluster, follow [these instrucions](https://bbglab.github.io/bbgwiki/Cluster_basics/NewFolders/).
+
 Remember to add the dataset to the **BBG Datasets spreadsheet**, either if it is external
 (downloaded from a repository, from a collaborator) or internal (in house sequenced).
-Please find further information about the BBG Datasets
-[here](https://bbglab.github.io/bbgwiki/Datasets/Datasets_BBGLAB/).
+Find further information about the BBG Datasets [here](https://bbglab.github.io/bbgwiki/Datasets/Datasets_BBGLAB/).
+
 
-To create these folders, follow
-[these instrucions](https://bbglab.github.io/bbgwiki/Cluster_basics/NewFolders/).
 
 ## Properly organize your project folder
 
-Remember to follow the
-[BBGlab best practices](https://bbglab.github.io/bbgwiki/BBGProtocols/BBglab_data_organization/).
-when organizing your project directory.
-In addition, you should create a copy of the **Project Compilation spreadsheet** with your name,
-fill it up with the information of your project/s and keep updating it whenever needed.
-Please find the Project Compilation files
-[here](https://drive.google.com/drive/u/0/folders/1vGfO8B-vU-QRRf4ho4B5_Tnfe4neS7Y9).
+Remember to follow the **[BBGlab best practices](https://bbglab.github.io/bbgwiki/BBGProtocols/BBglab_data_organization/)** when organizing your project directory.
+
+Additionally, you should fill the **Project Compilation spreadsheet** that indicates all the paths in the cluster that you have been working in across all your projects. For that:
+
+1. Create a copy of the **[Project Compilation template](https://docs.google.com/spreadsheets/d/1jJleTek9eP4S6CCe5fO8_M4-vLuKhumgKjlQ58jP_rc/edit?gid=0#gid=0)**
+2. Change the name of the document with your information as follow:
+ `ProjectCompilation-202X-NameSurename` 
+3. Store it in your Google drive folder (to be updated once the bbglab shared drive is available to store it accordingly)
+4. Modify the document by removing the rows showing the examples, and adding our own entries.
+
+Remember to keep updating the file regularly so that information is available for everyone at any time. Note that this file will be needed once you do the **[BBGlab Exit Protocol](https://drive.google.com/file/d/1BnhLZCygroJ-dfamuZw8YvDgndIFmzzP/view?usp=drive_link)**.
 
 ## Properly organize your google drive
 
-You can also follow the
-[BBGlab best practices](https://bbglab.github.io/bbgwiki/BBGProtocols/BBglab_data_organization/) for that.
+You can also follow the [BBGlab best practices](https://bbglab.github.io/bbgwiki/BBGProtocols/BBglab_data_organization/) for that.
 
 ## Track changes in Git
 
 You should have a Github account to track all your code in terms of version control and collaboration.
-You can create a github account if you don't have one yet. Check the
-[Git guidelines](https://bbglab.github.io/bbgwiki/Tools/Programming/git/).
+You can create a github account if you don't have one yet. Check the [Git guidelines](https://bbglab.github.io/bbgwiki/Tools/Programming/git/).
 
 ## Reference
 
 - Elisabet Figuerola
+- Ferriol Calvet
 - Mònica Sánchez