Version 2.1

Bug correction in the computation of "PiTotal" (total nucleotide diversity) when using outgroup sequence.

Binary seq_stat_2pop from source code : seq_stat_2pop_bppV3.cpp.

Please refer to the previous release for the binaries of the other programs.

Version 2.0

Change to bio++ V3 for seq_stat_2pop (source code seq_stat_2pop_bppV3.cpp).

Please refer to the previous release for the binaries of the other programs.

Version 1.3bis

Add seq_stat_coding

Version 1.3

New program seq_stat_2pop_2N that compute statistics using only two individuals.

Version 1.2

The Dxy (i.e., Pi between) statistic have been corrected.

Dxy or Pi between : Average number of pairwise differences between sequences from two populations, excluding all comparisons between sequences within populations (Nei 1987; Cruickshank & Hahn, 2014)

Version 1.1

Include a weighted version of the Nei's Fst where Fst = 1 - meanPiIntra/piTotal and meanPiIntra = w * p_x + (1-w) * p_y with :

• w = 1.* n_x/(n_x + n_y)
• p_x and p_y the nucleotide diversity of population x and y respectively
• n_x and n_y is the sample size of the population x and y respectively

In the unweighted version, w = 0.5.

Version 1

v1

Example data files