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Implement NegativeBinomial error model

Status: Open.

#108 In bioDS/beast-phylonco;

· Ming11110 opened on Dec 1, 2025

Refactor PhyloDiscrete simulator framework

Status: Open.

#107 In bioDS/beast-phylonco;

· Ming11110 opened on Dec 1, 2025

Allow GT16 substitution and error models to handle NucleotideDiploid10 data

enhancementNew feature or requestNew feature or request

Status: Open.

#105 In bioDS/beast-phylonco;

· kche309 opened on Oct 16, 2025

Implement GT10 error model

enhancementNew feature or requestNew feature or request

Status: Open.

#104 In bioDS/beast-phylonco;

· kche309 opened on Oct 16, 2025

Review lphy datatype naming, error message: Unphased genotype not supported for error model.

bugSomething isn't workingSomething isn't working

method naming

Status: Open.

#98 In bioDS/beast-phylonco;

· EvaLiyt opened on Sep 30, 2025

[Beast Junit] Junit tests using NucleotideDiploid16 data type cannot be initialized

bugSomething isn't workingSomething isn't working

Status: Open.

#95 In bioDS/beast-phylonco;

· kche309 opened on Sep 22, 2025

[Beast Junit] Unable to find beast jar for Junit tests

bugSomething isn't workingSomething isn't working

Status: Open.

#94 In bioDS/beast-phylonco;

· kche309 opened on Sep 22, 2025

[LphyBeast] Missing integration test for unphase function

Status: Open.

#93 In bioDS/beast-phylonco;

· kche309 opened on Sep 22, 2025

[LPhy Junit] Unit tests in NucleotideGenotypeHelperTest failing

bugSomething isn't workingSomething isn't working

Status: Open.

#92 In bioDS/beast-phylonco;

· kche309 opened on Sep 22, 2025

Implement GT10 model in Lphy

enhancementNew feature or requestNew feature or request

Status: Open.

#89 In bioDS/beast-phylonco;

· yaox1818 opened on Sep 11, 2025

Notes for developers and building releases

documentationImprovements or additions to documentationImprovements or additions to documentation

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#88 In bioDS/beast-phylonco;

· kche309 opened on Aug 28, 2025

Developer guidelines and rules

Developer RulesRules and guidelines for developers.Rules and guidelines for developers.

Status: Open.

#87 In bioDS/beast-phylonco;

· kche309 opened on Aug 28, 2025