feature: Rotate all labels at once using annotation_rotation#7
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Nesper94 wants to merge 1 commit intobiobakery:masterfrom
Open
feature: Rotate all labels at once using annotation_rotation#7Nesper94 wants to merge 1 commit intobiobakery:masterfrom
Nesper94 wants to merge 1 commit intobiobakery:masterfrom
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Hi,
Thanks a lot for this amazing software, I have found it very useful!
I was using GraPhlAn and wanted a way to rotate all labels at once, and avoid editing clade by clade in the annotation file, so this was my way to do it.
I am biologist and I have not formal formation in programming, and I don't understand completely the working of GraPhlAn, so I apologize in advance if there are issues with this code. However, I have tested it in some cases (not a thorough testing) and it worked without problems.
The main idea is to be able to rotate 90° all labels by setting
annotation_rotation 90in the annotation file. Ifannotation_rotationis set in a clade, it overrides the global option.annotation_rotationstill have two possible values: 0 and 90.Here is an example annotation file showing how the new feature would be used. I also provide the corresponding input tree for
graphlan_annotate.py. The output should be:Hope you find it useful and if not implementable maybe can help to shed some light in the implementation of this feature.
Thanks!