Pytorch refactor#168

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ebolyen wants to merge 28 commits intobiocore:masterfrom

Keegan-Evans:pytorch-refactor

Commits on Apr 12, 2022

DRAFT: first draft of model
Keegan-Evans
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Commits on Apr 15, 2022

REFACTOR: beginning of refactor
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Commits on Apr 18, 2022

FEAT: forward likelihood now sum(lu, lv, ly)
Keegan-Evans
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Commits on Apr 19, 2022

DEBUG: first pass package refactoring
Keegan-Evans
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Commits on Apr 27, 2022

Commits on Apr 29, 2022

FEAT: function for ordination created
Keegan-Evans
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Commits on Apr 30, 2022

FEAT: Produces OrdinationResults
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Commits on May 2, 2022

IMP: cleanup before working on tests.
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Commits on May 3, 2022

TEST: test_multimodal runs but fails.
Keegan-Evans
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Commits on May 6, 2022

IMP: var renaming and observation based epochs
Keegan-Evans
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Commits on May 19, 2022

Commits on May 25, 2022

Commits on Jun 1, 2022

BUG: paired-omics working now.
Keegan-Evans
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Commits on Jun 3, 2022

TEST: adding tests for ranks_bare
Keegan-Evans
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