BeatAML Genomics Workflow

Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
analyses		analyses
.gitattributes		.gitattributes
README.md		README.md
README_rnaseq.md		README_rnaseq.md
README_wes.md		README_wes.md
baml_helpers.R		baml_helpers.R
filter_varscan.scala		filter_varscan.scala
format_vcf.R		format_vcf.R
fpfilter.patch		fpfilter.patch
gatk_lane_level.scala		gatk_lane_level.scala
gatk_picard_align_stats.scala		gatk_picard_align_stats.scala
pindel.scala		pindel.scala
run_gatk.sh		run_gatk.sh
somatic_genotyping2.scala		somatic_genotyping2.scala
subjunc_rnaseq.scala		subjunc_rnaseq.scala
summarize_align_lane.scala		summarize_align_lane.scala
summarize_genotyping2.scala		summarize_genotyping2.scala
tophat_fusion_search.scala		tophat_fusion_search.scala
tumor_only_genotyping.scala		tumor_only_genotyping.scala
tumor_only_varscan.scala		tumor_only_varscan.scala
varscan.patch		varscan.patch

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