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Fix StructureQuery #872

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Fix StructureQuery #872

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6 changes: 3 additions & 3 deletions src/biotite/database/rcsb/query.py
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Original file line number Diff line number Diff line change
Expand Up @@ -439,9 +439,9 @@ class StructureQuery(SingleQuery):
Examples
--------

>>> query = StructureQuery("1L2Y", chain="A")
>>> query = StructureQuery("1GYA", assembly="1")
>>> print(sorted(search(query)))
['1L2Y', '1RIJ', '2JOF', '2LDJ', '2M7D', '7MQS', '9DPF']
['1CDB', '1GYA', '1QA9']
"""

def __init__(self, pdb_id, chain=None, assembly=None, strict=True):
Expand All @@ -452,7 +452,7 @@ def __init__(self, pdb_id, chain=None, assembly=None, strict=True):
):
raise TypeError("Either the chain ID or assembly ID must be set")
elif chain is None:
self._value = {"entry_id": pdb_id, "asssembly_id": assembly}
self._value = {"entry_id": pdb_id, "assembly_id": assembly}
else:
self._value = {"entry_id": pdb_id, "asym_id": chain}

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5 changes: 3 additions & 2 deletions tests/database/test_rcsb.py
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Original file line number Diff line number Diff line change
Expand Up @@ -196,8 +196,9 @@ def test_search_sequence():


@pytest.mark.skipif(cannot_connect_to(RCSB_URL), reason="RCSB PDB is not available")
def test_search_structure():
query = rcsb.StructureQuery("1L2Y", chain="A")
@pytest.mark.parametrize("chain, assembly", [("A", None), (None, "1")])
def test_search_structure(chain, assembly):
query = rcsb.StructureQuery("1L2Y", chain=chain, assembly=assembly)
test_ids = rcsb.search(query)
assert "1L2Y" in test_ids

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