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tasks for bam2fq pipeline#338

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hexylena merged 8 commits intodevelopfrom
bam2fq
Jul 29, 2025
Merged

tasks for bam2fq pipeline#338
hexylena merged 8 commits intodevelopfrom
bam2fq

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@hexylena hexylena commented Apr 23, 2025

Checklist

  • Pull request details were added to CHANGELOG.md.
  • Documentation was updated (if required).
  • parameter_meta was added/updated (if required).
  • Submodule branches are on develop or a tagged commit.

here i've

  • Added biopet task for validating fastq (it's a nice tool! Thanks for writing it.)
  • Updated the samtools.Fastq task based on discussion in chat, I need to be able to specify the singleton location in addition to 1/2

@hexylena hexylena merged commit 0dc5796 into develop Jul 29, 2025
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@hexylena hexylena deleted the bam2fq branch February 16, 2026 11:46
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2 participants