Code supplement for "Simple models of non-random mating and environmental transmission bias standard human genetics statistical methods."

Manifest

• ascertainment_sims.py: family GWAS simulations with ascertainment
• ey_sim.py: education years case study simulation
• general_simulations.py: primary simulations incorporating xAM, VT, and/or GxE
• gwas_pwr_t1e.r: computations of on- / off-target assocation power / type i error rates
• phenotype_defn_supplement.r: additional phenotype definitions
• psych_cors.csv: inputs for psychiatric disorder simulations
• nhird_cca.r: canonical correlation analysis of NHIRD phenotypes
• nhird_cors.csv: inputs for NHIRD cca
• psychiatric_sims.py: simulations involving psychiatric disorders
• sibdiff.nb: Mathematica notebook for computation of expected sibling-difference GWAS estimates