Releases · brendanf/FUNGuildR

This release includes several improvements and one important bug fix:

funguild_assign() and get_funguild_db() now return additional columns
"guid" and "mbNumber" from the new version of FUNGuild
get_funguild_db() now returns the database as-is, without changing spaces to
underscores in the species name, or adding the search key. The current
funguild_assign() should still work with old locally cached databases, but
older versions will not work with new cached databases.
Species names in the taxon column of funguild_assign() output now have a
space instead of an underscore between the genus and species epithets.
Added function funguild_query() to submit queries to the FUNGuild web API.
It also works with a locally cached database.
funguild_assign() now accepts Sintax ("k:", "p:"...) or Unite ("k__,
"p__", ...) style taxonomy strings.
funguild_assign() now works in many cases when the Taxonomy column
contains only genus or species names. The most complete results will still be
achieved when the whole taxonomy string is included.
Fixed a bug where funguild_assign() incorrectly returned order- or
family-level guild annotations even when genus- or species-level annotations
were available.

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