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gnomAD assistant prototype #1820

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b498013
update grove yml and .gitignore
mattsolo1 Aug 31, 2025
71daf62
feat: Add gnomAD Assistant powered by CopilotKit
mattsolo1 Aug 31, 2025
89e3499
feat: Replace floating sidebar with resizable split-screen layout for…
mattsolo1 Sep 2, 2025
101d419
feat: Add CopilotKit context awareness and variant display support
mattsolo1 Sep 2, 2025
27d8efd
fix: Update CopilotKit action to match MCP tool name
mattsolo1 Sep 2, 2025
95af816
update model
mattsolo1 Sep 3, 2025
0825aba
Remove get_variant_summary copilot action
mattsolo1 Sep 3, 2025
a88053b
make dataset version copilot readable from document title
mattsolo1 Sep 3, 2025
1f50090
feat: Add context-aware chat suggestions and default open state
mattsolo1 Sep 3, 2025
cab4b22
fix: Remove unused CopilotSidebar component to prevent duplicate acti…
mattsolo1 Sep 3, 2025
457c19c
feat: add mendelian table env
mattsolo1 Sep 3, 2025
3009bfe
feat: Add agent state messages with inline tool execution display
mattsolo1 Sep 3, 2025
7c3ecd4
feat: add variant card display in chat assistant
mattsolo1 Sep 4, 2025
a234693
feat: use 2.5 flash
mattsolo1 Sep 4, 2025
491222e
update pnpm lock
mattsolo1 Nov 18, 2025
11b43f7
update tsv ref
mattsolo1 Nov 19, 2025
f1121b9
feat: add region context support and Juha API query suggestions
mattsolo1 Nov 19, 2025
68d2370
feat: add Juha API presentation components with virtualized tables
mattsolo1 Nov 19, 2025
c4d5b2b
feat: integrate CopilotKit with MCP server and fix production deploym…
mattsolo1 Nov 19, 2025
e7356d4
feat: add fullscreen mode to gnomAD chat assistant
mattsolo1 Nov 20, 2025
f2dc7a6
feat: enhance CopilotKit chat UI with settings modal and improved sty…
mattsolo1 Nov 20, 2025
87f6de1
feat: add dynamic model selection, custom prompts, and context displa…
mattsolo1 Nov 20, 2025
5b3b098
feat: implement PostgreSQL chat history and fix environment configura…
mattsolo1 Nov 24, 2025
7b3cf69
feat: implement chat history message display with proper message reco…
mattsolo1 Nov 24, 2025
83aab4d
feat: create new chat threads in database when user clicks New Chat
mattsolo1 Nov 24, 2025
25aa66c
feat: add delete button for chat threads in sidebar
mattsolo1 Nov 24, 2025
f650586
feat: implement user-specific chat threads with Auth0 authentication
mattsolo1 Nov 24, 2025
43dbcb2
feat: implement hot reloading for API service with SWC transpiler
mattsolo1 Nov 25, 2025
8276daa
feat: enable storage and restoration of tool execution messages
mattsolo1 Nov 25, 2025
9fc4ce3
fix: enable hot reloading with nodemon legacy watch mode
mattsolo1 Nov 25, 2025
bb86f7e
feat: implement scalable tool result storage with separate database t…
mattsolo1 Nov 25, 2025
56da577
fix: resolve user ID mismatch in CopilotKit chat persistence
mattsolo1 Nov 25, 2025
6a6d98c
feat: implement context-aware chat history with smart titles and navi…
mattsolo1 Nov 25, 2025
6547841
feat: refactor settings UI from modal to integrated full-panel view
mattsolo1 Nov 25, 2025
b9f286b
feat: add multi-section navigation to settings panel
mattsolo1 Nov 25, 2025
98fc24f
feat: implement AI-powered automatic chat title generation
mattsolo1 Nov 25, 2025
50586d8
fix: resolve transaction isolation and GraphQL type errors in chat pe…
mattsolo1 Dec 2, 2025
feda3fd
feat: implement role-based user management and feedback system
mattsolo1 Dec 2, 2025
32ec30f
feat: add frontend UI for user management and feedback
mattsolo1 Dec 2, 2025
7c09498
refactor: consolidate all assistant files into dedicated directory
mattsolo1 Dec 2, 2025
dd67ec3
feat: separate admin panel from settings and refactor URL-based navig…
mattsolo1 Dec 2, 2025
6bd288f
feat: replace close buttons with persistent navigation bar
mattsolo1 Dec 2, 2025
6e63b3e
fix: free text feeback ficon
mattsolo1 Dec 2, 2025
df3443d
fix: make feedback modal visible with custom ChatModal component
mattsolo1 Dec 2, 2025
0259f06
refactor: trigger feedback modal on thumbs up/down clicks
mattsolo1 Dec 3, 2025
6afae5e
feat: add comprehensive analytics, feedback, and privacy features
mattsolo1 Dec 3, 2025
bc90786
fix: correct tool result token counting and add debug logging
mattsolo1 Dec 3, 2025
2150edc
refactor: modularize CopilotKit server for improved maintainability
mattsolo1 Dec 3, 2025
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11 changes: 11 additions & 0 deletions .gitignore
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Original file line number Diff line number Diff line change
Expand Up @@ -18,6 +18,10 @@ deploy_config.json

browser/build.env

# Environment configuration (contains local paths and secrets)
.env
.env.fish

# Build outputs
browser/dist

Expand All @@ -36,3 +40,10 @@ hail-*.log

# Reads metadata databases
reads/*.db

.grove
.grove-worktrees

# Binary artifacts for Docker builds
bin/
resources/
5 changes: 5 additions & 0 deletions browser/package.json
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Original file line number Diff line number Diff line change
Expand Up @@ -11,6 +11,11 @@
"dist"
],
"dependencies": {
"@auth0/auth0-react": "^2.2.4",
"@copilotkit/react-core": "^1.10.6",
"@copilotkit/react-textarea": "^1.10.6",
"@copilotkit/react-ui": "^1.10.6",
"@copilotkit/runtime-client-gql": "1.10.6",
"@fortawesome/fontawesome-free": "^5.8.1",
"@gnomad/dataset-metadata": "*",
"@gnomad/identifiers": "3.0.1",
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