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Change defualt to default in several files. #261

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4 changes: 2 additions & 2 deletions CHANGELOG
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Expand Up @@ -27,7 +27,7 @@ metaWRAP v=1.3 (In development)

metaWRAP v=1.2 (April 2019)
General
config-metawrap sets database locations to $HOME by defualt during installation
config-metawrap sets database locations to $HOME by default during installation
numpy, openblas, and scipy versions updated for concoct 1.0
enforce CheckM v1.0.12 (newer versions are reported to fail)
fixed depricated matplotlib functions in plotting scripts
Expand Down Expand Up @@ -288,7 +288,7 @@ metaWRAP v=0.3 (November 2017)
Fixed issue with program thinking READQC did not finish correctly
Assembly module:
Removed joint assembly feature. Now you can only assemble with metaSPAdes OR Megahit.
(megahit is defualt due to its speed)
(megahit is default due to its speed)
Changed minimum contig length from 500bp to 1000bp
Binning module:
This module is now split into four parts for modularity:
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -187,7 +187,7 @@ Options:
-2 STR reverse fastq reads
-o STR output directory
-m INT memory in GB (default=10)
-t INT number of threads (defualt=1)
-t INT number of threads (default=1)

--use-megahit assemble with megahit (default)
--use-metaspades assemble with metaspades instead of megahit
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2 changes: 1 addition & 1 deletion bin/metawrap-modules/assembly.sh
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Expand Up @@ -23,7 +23,7 @@ help_message () {
echo " -2 STR reverse fastq reads"
echo " -o STR output directory"
echo " -m INT memory in GB (default=24)"
echo " -t INT number of threads (defualt=1)"
echo " -t INT number of threads (default=1)"
echo " -l INT minimum length of assembled contigs (default=1000)"
echo ""
echo " --megahit assemble with megahit (default)"
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2 changes: 1 addition & 1 deletion bin/metawrap-modules/binning.sh
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Expand Up @@ -6,7 +6,7 @@
# Ideally it should take in the assembly file of all of your samples, followed by the reads of all the samples that went into the assembly.
# The more samples, the better the binning.
#
# The script uses metaBAT2 and/or CONCOCT and/or MaxBin2 to bin the contigs. MetaBAT2 is the defualt due to its speed and great performance,
# The script uses metaBAT2 and/or CONCOCT and/or MaxBin2 to bin the contigs. MetaBAT2 is the default due to its speed and great performance,
# but all these binners have their advantages and disadvantages, so it recomended to run the bin_refinement module to QC the bins, get the
# best bins of all of each method, and to reassembly and refine the final bins.
#
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