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DataManager.pl
DataManager.pl
 
 
Mobster.sh
Mobster.sh
 
 
N50.pl
N50.pl
 
 
QCbesthit2taxonomyQCproperties.pl
QCbesthit2taxonomyQCproperties.pl
 
 
RandFetch_v2.pl
RandFetch_v2.pl
 
 
_vcf2fasta_uni.pl
_vcf2fasta_uni.pl
 
 
add_length.pl
add_length.pl
 
 
auto-GC-check.pl
auto-GC-check.pl
 
 
auto-GCSeqsize-check.pl
auto-GCSeqsize-check.pl
 
 
batchFilter_A_AT_solexaNonPE.pl
batchFilter_A_AT_solexaNonPE.pl
 
 
batchFilter_A_AT_solexaPE.pl
batchFilter_A_AT_solexaPE.pl
 
 
batchFilter_N_AT_solexaNonPE.pl
batchFilter_N_AT_solexaNonPE.pl
 
 
batchFilter_N_AT_solexaPE.pl
batchFilter_N_AT_solexaPE.pl
 
 
batchQC.pl
batchQC.pl
 
 
batchQC_A.pl
batchQC_A.pl
 
 
batchQC_N_AT.pl
batchQC_N_AT.pl
 
 
batchScreen.pl
batchScreen.pl
 
 
batch_iprscan_submit.pl
batch_iprscan_submit.pl
 
 
batch_sub_blastn.pl
batch_sub_blastn.pl
 
 
batch_sub_megablastn.pl
batch_sub_megablastn.pl
 
 
batch_sub_mpiblast.pl
batch_sub_mpiblast.pl
 
 
batch_sub_mpiblast1.pl
batch_sub_mpiblast1.pl
 
 
bd_pd.sh
bd_pd.sh
 
 
binizeData.pl
binizeData.pl
 
 
blast2firstKnownHit.pl
blast2firstKnownHit.pl
 
 
blast_parse.pl
blast_parse.pl
 
 
blastx2fasta.pl
blastx2fasta.pl
 
 
blat2gff.pl
blat2gff.pl
 
 
chopLongSeq2ShortSeq.pl
chopLongSeq2ShortSeq.pl
 
 
clean_B_N_GA.pl
clean_B_N_GA.pl
 
 
clean_B_N_GA_BerryGenomics.pl
clean_B_N_GA_BerryGenomics.pl
 
 
clean_B_N_HiSeq.pl
clean_B_N_HiSeq.pl
 
 
clean_B_N_HiSeq_BerryGenomics.pl
clean_B_N_HiSeq_BerryGenomics.pl
 
 
clean_reads.pl
clean_reads.pl
 
 
contigCoverage.pl
contigCoverage.pl
 
 
convFastq2FnaQual.pl
convFastq2FnaQual.pl
 
 
convFnaQual2Fastq.pl
convFnaQual2Fastq.pl
 
 
convertFQ_from_MT_to_PE.pl
convertFQ_from_MT_to_PE.pl
 
 
convertSolexaTo454PEReads.pl
convertSolexaTo454PEReads.pl
 
 
count_seq_di_tri_repeat_of_reads.pl
count_seq_di_tri_repeat_of_reads.pl
 
 
coverage_distr.R
coverage_distr.R
 
 
create_fake_454_PE_Reads.pl
create_fake_454_PE_Reads.pl
 
 
create_fake_454_PE_Reads_v2.pl
create_fake_454_PE_Reads_v2.pl
 
 
create_fake_454_PE_Reads_v3.pl
create_fake_454_PE_Reads_v3.pl
 
 
create_fake_454_PE_Reads_v4_comrev.pl
create_fake_454_PE_Reads_v4_comrev.pl
 
 
create_fake_Solexa_PEreads_from_fasta.pl
create_fake_Solexa_PEreads_from_fasta.pl
 
 
crossTables.pl
crossTables.pl
 
 
data_rsync_GA.pl
data_rsync_GA.pl
 
 
data_rsync_HiSeq.pl
data_rsync_HiSeq.pl
 
 
data_rsync_dog.sh
data_rsync_dog.sh
 
 
dog_lims.pl
dog_lims.pl
 
 
download_kegg_pathway.pl
download_kegg_pathway.pl
 
 
ex_dbSNP_4.4_anno.pl
ex_dbSNP_4.4_anno.pl
 
 
execute.pl
execute.pl
 
 
extra_polyN_reads.pl
extra_polyN_reads.pl
 
 
extract_chl_or_mit_reads.pl
extract_chl_or_mit_reads.pl
 
 
extract_subseq.pl
extract_subseq.pl
 
 
fastq_split.pl
fastq_split.pl
 
 
fastq_split.sh
fastq_split.sh
 
 
filter_region_abnormal_reads.pl
filter_region_abnormal_reads.pl
 
 
find_bridge_maq.pl
find_bridge_maq.pl
 
 
fix_frameshift.pl
fix_frameshift.pl
 
 
form_fna_qual.pl
form_fna_qual.pl
 
 
form_qual_for_fasta.pl
form_qual_for_fasta.pl
 
 
fq_all2std.pl
fq_all2std.pl
 
 
freq.pl
freq.pl
 
 
freq_bar.pl
freq_bar.pl
 
 
ga.pl
ga.pl
 
 
gc_count.pl
gc_count.pl
 
 
getBestScoreOneHit.pl
getBestScoreOneHit.pl
 
 
get_fasta_stats
get_fasta_stats
 
 
get_longest_from_getorf.pl
get_longest_from_getorf.pl
 
 
get_longest_from_oases.pl
get_longest_from_oases.pl
 
 
get_taxid_and_father_id.pl
get_taxid_and_father_id.pl
 
 
gi2go_mysql.pl
gi2go_mysql.pl
 
 
gi2go_update.sh
gi2go_update.sh
 
 
go.R
go.R
 
 
go_one.R
go_one.R
 
 
heatmap.2_plot.R
heatmap.2_plot.R
 
 
hiseq.pl
hiseq.pl
 
 
homogenicity.R
homogenicity.R
 
 
info_update.pl
info_update.pl
 
 
info_update_dog.sh
info_update_dog.sh
 
 
info_update_kegg_pathway_mysql.pl
info_update_kegg_pathway_mysql.pl
 
 
kegg_species_pathway.pl
kegg_species_pathway.pl
 
 
kmer_plot.sh
kmer_plot.sh
 
 
ko_pathway.pl
ko_pathway.pl
 
 
ko_pathway_from_genename.pl
ko_pathway_from_genename.pl
 
 
line_select_by_columns.pl
line_select_by_columns.pl
 
 
listBlastn.pl
listBlastn.pl
 
 
listBlastnSingle.pl
listBlastnSingle.pl
 
 
misa.pl
misa.pl
 
 
multi-process-cutadapt.pl
multi-process-cutadapt.pl
 
 
multi-process-cutadapt_0.1.pl
multi-process-cutadapt_0.1.pl
 
 
multi-process.pl
multi-process.pl
 
 
multiparanoid.pl
multiparanoid.pl
 
 
pindel2seq.pl
pindel2seq.pl
 
 
post_oases_stat.sh
post_oases_stat.sh
 
 
qc_trim.pl
qc_trim.pl
 
 
qc_trim_gz.pl
qc_trim_gz.pl
 
 

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my perl and R scripts

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