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Merged
iahncajigas merged 1 commit into from
Mar 8, 2026
Merged

Tighten source-driven analysis and notebook audit parity #41

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18 changes: 9 additions & 9 deletions notebooks/ExplicitStimulusWhiskerData.ipynb
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"cells": [
{
"cell_type": "markdown",
"id": "8b8aa493",
"id": "a51db33a",
"metadata": {},
"source": [
"<!-- parity-note -->\n",
Expand All @@ -15,7 +15,7 @@
{
"cell_type": "code",
"execution_count": null,
"id": "dbf8e486",
"id": "9f51d683",
"metadata": {},
"outputs": [],
"source": [
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{
"cell_type": "code",
"execution_count": null,
"id": "e296bd4d",
"id": "4ee3a32e",
"metadata": {},
"outputs": [],
"source": [
Expand All @@ -106,7 +106,7 @@
{
"cell_type": "code",
"execution_count": null,
"id": "6a18af75",
"id": "35afed3f",
"metadata": {},
"outputs": [],
"source": [
Expand Down Expand Up @@ -134,7 +134,7 @@
{
"cell_type": "code",
"execution_count": null,
"id": "fd207a34",
"id": "214e2ec3",
"metadata": {},
"outputs": [],
"source": [
Expand All @@ -149,7 +149,7 @@
{
"cell_type": "code",
"execution_count": null,
"id": "2afb535d",
"id": "782d0257",
"metadata": {},
"outputs": [],
"source": [
Expand All @@ -170,7 +170,7 @@
{
"cell_type": "code",
"execution_count": null,
"id": "7a48f375",
"id": "494c31d8",
"metadata": {},
"outputs": [],
"source": [
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{
"cell_type": "code",
"execution_count": null,
"id": "043ef33a",
"id": "b49274b0",
"metadata": {},
"outputs": [],
"source": [
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{
"cell_type": "code",
"execution_count": null,
"id": "d66ac872",
"id": "c1129e2d",
"metadata": {},
"outputs": [],
"source": [
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14 changes: 7 additions & 7 deletions notebooks/HippocampalPlaceCellExample.ipynb
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"cells": [
{
"cell_type": "markdown",
"id": "39256c2a",
"id": "04918a27",
"metadata": {},
"source": [
"<!-- parity-note -->\n",
Expand All @@ -15,7 +15,7 @@
{
"cell_type": "code",
"execution_count": null,
"id": "2b552e70",
"id": "cd6ae412",
"metadata": {},
"outputs": [],
"source": [
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{
"cell_type": "code",
"execution_count": null,
"id": "02b3faec",
"id": "bc94da8b",
"metadata": {},
"outputs": [],
"source": [
Expand All @@ -105,7 +105,7 @@
{
"cell_type": "code",
"execution_count": null,
"id": "3e5df761",
"id": "7383932a",
"metadata": {},
"outputs": [],
"source": [
Expand All @@ -125,7 +125,7 @@
{
"cell_type": "code",
"execution_count": null,
"id": "22988fc3",
"id": "3d6944b1",
"metadata": {},
"outputs": [],
"source": [
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{
"cell_type": "code",
"execution_count": null,
"id": "2bb2d885",
"id": "f52ed4fd",
"metadata": {},
"outputs": [],
"source": [
Expand All @@ -179,7 +179,7 @@
{
"cell_type": "code",
"execution_count": null,
"id": "34d08f71",
"id": "ca3ffc88",
"metadata": {},
"outputs": [],
"source": [
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20 changes: 10 additions & 10 deletions notebooks/HybridFilterExample.ipynb
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"cells": [
{
"cell_type": "markdown",
"id": "deae92f2",
"id": "799ac706",
"metadata": {},
"source": [
"<!-- parity-note -->\n",
"## MATLAB Parity Note\n",
"- Source MATLAB helpfile: `HybridFilterExample.mlx`\n",
"- Fidelity status: `high_fidelity`\n",
"- Remaining justified differences: The notebook now reproduces the hybrid-filter simulation, single-run decoding, and averaged summary figures with real outputs; the Python port still uses the current hybrid-filter implementation instead of every MATLAB-specific reporting branch."
"- Remaining justified differences: The notebook now reproduces the hybrid-filter simulation, single-run decoding, and averaged summary figures with real outputs; the Python port still uses the current hybrid-filter implementation instead of every MATLAB-specific reporting branch.\n"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "ad07c855",
"id": "ac9d53a9",
"metadata": {},
"outputs": [],
"source": [
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{
"cell_type": "code",
"execution_count": null,
"id": "8ad6c4c4",
"id": "bf21531d",
"metadata": {},
"outputs": [],
"source": [
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{
"cell_type": "code",
"execution_count": null,
"id": "d3676bdb",
"id": "e005f11e",
"metadata": {},
"outputs": [],
"source": [
Expand All @@ -98,7 +98,7 @@
{
"cell_type": "code",
"execution_count": null,
"id": "c0ac4ff8",
"id": "f52cdb38",
"metadata": {},
"outputs": [],
"source": [
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{
"cell_type": "code",
"execution_count": null,
"id": "20954cd6",
"id": "3c6317b7",
"metadata": {},
"outputs": [],
"source": [
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{
"cell_type": "code",
"execution_count": null,
"id": "e59c36e8",
"id": "c0a4b72b",
"metadata": {},
"outputs": [],
"source": [
Expand All @@ -172,7 +172,7 @@
{
"cell_type": "code",
"execution_count": null,
"id": "1da0a680",
"id": "e28a4b2e",
"metadata": {},
"outputs": [],
"source": [
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},
"nbformat": 4,
"nbformat_minor": 5
}
}
38 changes: 19 additions & 19 deletions notebooks/PPSimExample.ipynb
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"cells": [
{
"cell_type": "markdown",
"id": "7eb3e8aa",
"id": "75db499a",
"metadata": {},
"source": [
"<!-- parity-note -->\n",
Expand All @@ -15,7 +15,7 @@
{
"cell_type": "code",
"execution_count": null,
"id": "9b87979a",
"id": "344b225c",
"metadata": {},
"outputs": [],
"source": [
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{
"cell_type": "code",
"execution_count": null,
"id": "11e65873",
"id": "e586ec40",
"metadata": {},
"outputs": [],
"source": [
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{
"cell_type": "code",
"execution_count": null,
"id": "5a9c6419",
"id": "e7759808",
"metadata": {},
"outputs": [],
"source": [
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{
"cell_type": "code",
"execution_count": null,
"id": "5637fb8b",
"id": "1066f0cb",
"metadata": {},
"outputs": [],
"source": [
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{
"cell_type": "code",
"execution_count": null,
"id": "79f48bf9",
"id": "c10cdb5a",
"metadata": {},
"outputs": [],
"source": [
Expand All @@ -116,7 +116,7 @@
{
"cell_type": "code",
"execution_count": null,
"id": "739175fd",
"id": "1bc35d15",
"metadata": {},
"outputs": [],
"source": [
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{
"cell_type": "code",
"execution_count": null,
"id": "9a5d334e",
"id": "c6fa075a",
"metadata": {},
"outputs": [],
"source": [
Expand All @@ -143,7 +143,7 @@
{
"cell_type": "code",
"execution_count": null,
"id": "1cf6bf85",
"id": "2c6f4f13",
"metadata": {},
"outputs": [],
"source": [
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{
"cell_type": "code",
"execution_count": null,
"id": "d1587532",
"id": "cb839486",
"metadata": {},
"outputs": [],
"source": [
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{
"cell_type": "code",
"execution_count": null,
"id": "4476c77c",
"id": "f728a04e",
"metadata": {},
"outputs": [],
"source": [
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{
"cell_type": "code",
"execution_count": null,
"id": "b208e63b",
"id": "c20b4fcd",
"metadata": {},
"outputs": [],
"source": [
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{
"cell_type": "code",
"execution_count": null,
"id": "cc4bacb4",
"id": "2058e202",
"metadata": {},
"outputs": [],
"source": [
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{
"cell_type": "code",
"execution_count": null,
"id": "81244323",
"id": "76209533",
"metadata": {},
"outputs": [],
"source": [
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{
"cell_type": "code",
"execution_count": null,
"id": "da3c3380",
"id": "11b2922d",
"metadata": {},
"outputs": [],
"source": [
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{
"cell_type": "code",
"execution_count": null,
"id": "9768bcd9",
"id": "2666d94d",
"metadata": {},
"outputs": [],
"source": [
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{
"cell_type": "code",
"execution_count": null,
"id": "91a6eb4a",
"id": "246bce8c",
"metadata": {},
"outputs": [],
"source": [
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{
"cell_type": "code",
"execution_count": null,
"id": "626975dc",
"id": "481ca8c7",
"metadata": {},
"outputs": [],
"source": [
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{
"cell_type": "code",
"execution_count": null,
"id": "54d342c8",
"id": "dc217235",
"metadata": {},
"outputs": [],
"source": [
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