v0.3.0: Full Matlab parity — methods, examples, and decoding algorithms#55

Merged

iahncajigas merged 19 commits intomainfrom

feature/v0.3.0-missing-methods

Mar 11, 2026

Commits on Mar 10, 2026

Port KF_EM, PP_EM, mPPCO decoding families + FitResSummary/Trial methods

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Regenerate notebooks, fix readme examples, refresh images

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Port remaining missing methods + fix getDesignMatrix dimension bug

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Fix final 4 parity gaps: validation lambda, burst stats, PPHybridFilter, docs

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Add target estimation, fix return signatures, and complete parity fixes

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Fix nspikeTrain nstCopy/setMinTime/setMaxTime to compute statistics

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Add Trial.getAllLabels() for Matlab parity

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Add psthGLM Monte Carlo CIs, GLM standard errors, and plot/resample fixes

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Fix SignalObj merge/xcov/periodogram/MTMspectrum for Matlab parity

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Fix Covariate normWindowedSignal and getSigRep for Matlab parity

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Add Matlab-matching Kalman filter, augmented-state smoother, and MC CIs

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Fix Analysis parameter passing and Granger causality coefficient extraction

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Commits on Mar 11, 2026

Fix 6 behavioral parity gaps found by comprehensive Matlab audit

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Rewrite paper examples as self-contained scripts with proper decoding APIs

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Fix example01 figure layout and epoch boundary to match Matlab

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Update help files and README for v0.3.0 parity

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Fix example03 Figure 5 to match Matlab: 3D mesh, Poisson link, fresh psthGLM

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Fix example04 grid resolution and orientation to match Matlab

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Regenerate NetworkTutorial.ipynb from builder to fix test

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