v0.16

New in version 0.16:

• New model collection for multi-class classification of tumor microenvironment components, used by HiTME
• New model collection for human PBMCs
• Include cell ontology dictionary for cell type naming

v0.14

Separate models for Monocytes and Macrophages; improvements to TME models to increase coverage.

v0.13

Includes multi-classifier models for TME cell types:

• TME_broad collection can be used to classify immune vs. non-immune (endothelial, epithelial, stromal cells)
• TME_HiRes collection comprises non-immune cells, and high granularity cell types for immune cells

These collections can be used directly together, to obtain multi-class labels (in scGate_multi metadata in output), e.g.:

scGate_models_DB <- get_scGateDB(version="v0.13")
models.multi <- scGate_models_DB$human$TME_HiRes

gated <- scGate(obj, model=models.multi)
table(gated$scGate_multi)

v0.9

Added multi-classifier model for human CD4 TIL subtypes

v0.4

Improved models for CD4 T and B cells

v0.3

Adding models for Myeloid cells and for MoMacDC (i.e. myeloid minus neutrophils)

v0.2

• T alpha-beta models for human and mouse

v0.1

First version of scGate_models DB

Includes the first version of mouse and human models to filter several immune cell types using scGate.