Scripts to look at methylation fraction distribution at modified sites detected by SMRT-seq (Figure 2)
Scripts to look at comparisons of AvL1 gene transcription in ChIP-seq peaks and in collinear blocks (Supplementary Fig. 10)
Paper here: Rodriguez, F., Yushenova, I.A., DiCorpo, D. et al. Bacterial N4-methylcytosine as an epigenetic mark in eukaryotic DNA. Nat Commun 13, 1072 (2022). https://doi.org/10.1038/s41467-022-28471-w