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covHisto_WG needs to be long[] to not overflow #7

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covHisto_WG needs to be long[] to not overflow #7

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2 changes: 1 addition & 1 deletion ExCID_v2.0/bin/Java_code/WGS_Stats_v1.java
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Expand Up @@ -56,7 +56,7 @@ public class WGS_Stats_v1
static int hitTargetCount = 0; //total targets with at least 1 read aligned to them
static int hitTarget_bufferonly_Count = 0; //total targets with no hits, except in buffer
static int[] covHisto = new int[1001]; //coverage histogram
static int[] covHisto_WG = new int[1001]; //coverage histogram for whole Genome
static long[] covHisto_WG = new long[1001]; //coverage histogram for whole Genome
static int nonTragetGoodHits = 0; //regions that have high coverage but are not in the target
static String VERSION = "WGSStatsV1.1 2015-03-25";
static Hashtable<String, SAMFileWriter> fht ;
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